Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02285 ATGGAAGCCAATGGAATGTTCTCTACCATCACTACTTCTGGTTTGCTTATTGATACCCCTTTacaccaacaacaacagcagcagcagcagcaacaacaacaacagaatCTTCCTAATCAGCAGCAAAATCCTCATCATTTGCATCATTCCCAAGTTGTTTCTTATGCTCCTCATCCTCATGACACTGACacacatcaacaacaacaacaattgcATCAGTTGAAACATGGGTACCCTCCAttttcttcatccaagaacaaAACTCAgcaacaacagcagcaacaacagcaacaaagCTCTCAGATGAGTGATGAAGATGAGCCAAATTTTCCAACTGAAGAAAGTTCTGGTGACCCAAAGAGAAAGATTTCACCTTGGCAAAGAATGAAATGGACTGATACAATGGTAAGACTTTTGATAATGGCTGTTTATTACATTGGTGATGAAGCTGGTTCTGAAGGGAATGATCCAAATAAGAAAAAGTCTAGTGGTTTGTTACAGAAGAAAGGAAAGTGGAAATCTGTTTCAAGGGCTATGATGGAAAAAGGGTTTTATGTTTCACCTCAACAATGTGAAGATAAGTTTAATGATTTGAATAAAAGGTATAAGAGAGTGAATGATATACTTGGTAAAGGAACAGCTTGTAGAGTTGTTGAGAATCAAAATTTGTTGGATACAATGGATTTGACACCAAAGATGAAAGATGAAGTTAGGAAATTGCTTAATTCTAAGCATCTTTTCTTTAGGGAAATGTGTGCTTATCATAATAGTTGTGGTCATGGTGGTGGTGCTGGTGGCGGCGGTGCTTCTGGTTCTAATGTTCATCATCAAGTGGAAGGtggaacaacaacaacaccaccTCAGAATCAACCTCAACTTCAACAGcagcaacagcagcagcagcaacaacattGTTTTCATTCATCAGAGAATGGTGTAGGGAATTTAGGTGGTTCAAGAGGAGaaggtttgaaaatgttgaAAATTGGTAGTGGAGATGTTGAagaggaagatgatgaagatgaagatgatgaatcagaagactattctgatgatgatgaagatgaatcaGGAGAAGGTGGTTCAAGAAGTCATCAAATAATTGGTCATTTaaatgatcaagaagaagatgaaaatgatgGAAAACCATCAAGAAAAAGGCCAAGAAAAGGAGGATTTTCATTTTCTGTGTCACCATCGTCATCATCATTAACATTGATGCATCAAATGAACAATGAAATAAGTGGTGTGTTTCAAGATGGAGGTAAAAGTCCATGGGAGAAAAAGCAATGGATAAGAAACAGGATATTGCAATTAGAGGAACAGAAAATAAGGTATGAATCACAAGCTTTTGAGCTTGAAAAACAAAGATTGAAATGGCAAAGGTATAGTAGCAAAAAAGAGAGGGAAATGGAGAGAGCTAAACTTGAGAATGAAAGgagaaaattagaaaatgagAGAATGGTTTTGCTTATTAGGAAGAAGGAGATTGAATTGATGAAtcttcaacaacaacagcagcaacaacaacactCTTCAACCTAG 1545 0.2919 MEANGMFSTITTSGLLIDTPLHQQQQQQQQQQQQQNLPNQQQNPHHLHHSQVVSYAPHPHDTDTHQQQQQLHQLKHGYPPFSSSKNKTQQQQQQQQQQSSQMSDEDEPNFPTEESSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGNDPNKKKSSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQNLLDTMDLTPKMKDEVRKLLNSKHLFFREMCAYHNSCGHGGGAGGGGASGSNVHHQVEGGTTTTPPQNQPQLQQQQQQQQQQHCFHSSENGVGNLGGSRGEGLKMLKIGSGDVEEEDDEDEDDESEDYSDDDEDESGEGGSRSHQIIGHLNDQEEDENDGKPSRKRPRKGGFSFSVSPSSSSLTLMHQMNNEISGVFQDGGKSPWEKKQWIRNRILQLEEQKIRYESQAFELEKQRLKWQRYSSKKEREMERAKLENERRKLENERMVLLIRKKEIELMNLQQQQQQQQHSST 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02285 514 MobiDBLite consensus disorder prediction 369 387 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 149 168 - -
Tsu01g02285 514 Pfam Myb/SANT-like DNA-binding domain 128 253 IPR044822 -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 22 49 - -
Tsu01g02285 514 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 12 514 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 22 126 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 264 402 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 60 106 - -
Tsu01g02285 514 Gene3D - 131 204 - -
Tsu01g02285 514 Coils Coil 436 456 - -
Tsu01g02285 514 PANTHER F16F4.11 PROTEIN-RELATED 12 514 - -
Tsu01g02285 514 Coils Coil 464 512 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 333 357 - -
Tsu01g02285 514 MobiDBLite consensus disorder prediction 275 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02285 Tsu-Chr1 24224974 24226692 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g02285 Myb_DNA-bind_4 6.6e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02285 - - cam:101509296 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02285 01 24224974 24226692 Tsu01g02285 01 24224974 24226692 ECH
Tsu07g03961 07 45715169 45716356 Tsu01g02285 01 24224974 24226692 PCT