Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02280 ATGATGAATTGTGTCatcatgttcttcttcttcctcttcttagGAACCTACATTGTACCGTGTCTAACACATAATGACACTTATGCACTTACTCTCTTCCGCCAACAAACAGACATACATGGCCAACTCCTCACCAATTGGACCGGAACTGACGCATGCTCGGCCACATGGCATGGTGTCATTTGCTCCCCAAACAATCGTGTCACATCCCTCACACTTCCATCCCTCAACCTCCGAGGACCCATCAACACCCTCTCTCCCCTCACCCATCTCCGCCTCCTCGACCTCCATAACAATCGCCTAAATGGCTCTGTTTCGCCCTCTCTCCTCTCCAACTGCACAAACCTCAAACTCCTCTACCTCGCCGGAAACGACTTTTCCGGCCAAATCCCACCTGAAATCTCGTCTCCGGTTAATCTCCTCCGTCTTGACCTCTCCGACAACAACCTTGCCGGTGCAATTCCAAATGAAATTTCCCGTTTAACTAGCCTCCTCACTCTCAGGCTTCAAAACAACGCACTCTCCGGTAACATCCCTGACCTCTCCTCTGCAATGCTGAATCTCACAGAGCTCAACATGACAAACAACGAATTCCATGGTCATATACCAAGTTCCATGGTTAAAACATTTGGTGATGAAAGCTTCTCCGGTAACGAAGGTTTATGTGGTTCAAAACCGTTCCGAGTCTGTTCCTCCACAGAGAACAATCATCCTTTTTCTGAACCGGCTCAGACCGTTCCTTCGAACCCAAGTTCTTTCCCTGAAACAAGTGTAGTCGCAAGACCGAGAAGTCAACACCATAAAGGGTTAAGACCTGGTGCAATTGTAGCCATTGTGGTGGCAATTTGTGTTGCATTGTTAGTGGTAACATCGTTTGTTGTTGCTCACTGTTGTGCTAGAGGGAGAGGTGTTAATAGTAATTCCATAGTGGGCAGTGAGGCTGGAAACGGAAAGAGAAAGAGTTATGGTAGTGAGAAGAAGGTGTATAATGCAAATGGTGGGAGTGGTGATAGTAGTGATGGGACTAGTGGAACTGATATGAGCAAGCTTGTGTTTTTTGATAGGAGGAATGGATTTGAATTGGAGGATTTGTTGCGTGCTTCTGCCGAGATGCTTGGGAAGGGTAGTCTGGGAACTGTTTATAGAGCAGTGCTTGATGATGGCAGTACAGTTGCTGTTAAGAGGTTAAAAGATGCAAATCCCTGTGCTAGGCATGAGTTTGAGCAGTATATGGATGTGATTGGGAAGCTTAAACACCCTAATATTGTTAAACTTAGAGCTTATTATTATGCTAAGGAAGAAAAGCTTCTTGTCTATGATTATCTCTCAAATGGAAGTTTGCATACTCTTCTTCATGGGAACCGTGGACCTGGGAGGATTCCATTGGATTGGACAACAAGAATAAGCTTGGTGTTAGGAGCAGCAAGAGGGCTAGCTAGGATTCATACAGAGTACAGTGCAGCAAAAGTGCCACATGGGAACGTGAAATCATCCAATGTACTACTTGACAAGAATGGTGTTGCATGCATATCTGACTTTGGTTTGTCACTACTATTAAATCCTGTTCATGCAATTGCAAGATTGGGAGGGTACAGAGCACCTGAACAGATAGAACAAAAGAGACTGTCTCAGCAAGCTGACGTGTACAGTTTTGGAGTGTTGCTATTGGAAGTTCTCACAGGGAGAGCTCCTTCATTACAGTATCCTTCCCCGGGAACGGCTCGTCCTCGTAAAGATGAAGAGGAACAAACTATGGTGGATCTTCCCAAATGGGTTCGATCAGTTGTGAGAGAAGAGTGGACTGGAGAGGTTTTTGATCAAGAACTTCTGCGATACAAGAATATTGAGGAAGAGCTTGTGTCAATGCTGCATGTTGGGTTGGCTTGTGTGGTGGCGCAACCGGAGAAGAGGCCAACTATGGTAGATGTTGTTAAGTTGATTGAGGATATCAGGGTAGAGCAATCTCCTCTGTGTGAGGACTATGATGAATCACGCAATTCACTTTCACCTTCCATTCCCACCACTGAAGATGGTCTTGCTTAG 2043 0.4503 MMNCVIMFFFFLFLGTYIVPCLTHNDTYALTLFRQQTDIHGQLLTNWTGTDACSATWHGVICSPNNRVTSLTLPSLNLRGPINTLSPLTHLRLLDLHNNRLNGSVSPSLLSNCTNLKLLYLAGNDFSGQIPPEISSPVNLLRLDLSDNNLAGAIPNEISRLTSLLTLRLQNNALSGNIPDLSSAMLNLTELNMTNNEFHGHIPSSMVKTFGDESFSGNEGLCGSKPFRVCSSTENNHPFSEPAQTVPSNPSSFPETSVVARPRSQHHKGLRPGAIVAIVVAICVALLVVTSFVVAHCCARGRGVNSNSIVGSEAGNGKRKSYGSEKKVYNANGGSGDSSDGTSGTDMSKLVFFDRRNGFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVKLRAYYYAKEEKLLVYDYLSNGSLHTLLHGNRGPGRIPLDWTTRISLVLGAARGLARIHTEYSAAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQIEQKRLSQQADVYSFGVLLLEVLTGRAPSLQYPSPGTARPRKDEEEQTMVDLPKWVRSVVREEWTGEVFDQELLRYKNIEEELVSMLHVGLACVVAQPEKRPTMVDVVKLIEDIRVEQSPLCEDYDESRNSLSPSIPTTEDGLA 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02280 680 MobiDBLite consensus disorder prediction 308 343 - -
Tsu01g02280 680 PANTHER LRR RECEPTOR-LIKE KINASE 19 671 - -
Tsu01g02280 680 Pfam Protein kinase domain 370 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02280 680 MobiDBLite consensus disorder prediction 658 680 - -
Tsu01g02280 680 Gene3D Phosphorylase Kinase; domain 1 342 441 - -
Tsu01g02280 680 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Tsu01g02280 680 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 671 - -
Tsu01g02280 680 Gene3D Ribonuclease Inhibitor 23 181 IPR032675 -
Tsu01g02280 680 SUPERFAMILY L domain-like 23 208 - -
Tsu01g02280 680 Gene3D Ribonuclease Inhibitor 187 230 IPR032675 -
Tsu01g02280 680 MobiDBLite consensus disorder prediction 235 256 - -
Tsu01g02280 680 Gene3D Transferase(Phosphotransferase) domain 1 442 668 - -
Tsu01g02280 680 ProSiteProfiles Protein kinase domain profile. 366 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02280 680 SUPERFAMILY Protein kinase-like (PK-like) 370 647 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02280 Tsu-Chr1 24139988 24143077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02280 22 676 Receptor kinase-like Gene Family AT2G36570 66.766 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu01g02280 Pkinase 9.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02280 - - gmx:102660494 977.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02280 01 24139988 24143077 Tsu01g02280 01 24139988 24143077 ECH
Tsu07g03966 07 45747795 45750880 Tsu01g02280 01 24139988 24143077 PCT