Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02271 ATGCAGGTTTATCAGCTATCAATTGGTGCTGCATGTGGACTCTCATGGCCTTCTGATAGAATCATCATACAAATTCTTGATGATTCAACTGACCAAACAATCAAGGAGTTGGTGCAAGTGGAATGCCGTAAATGGGAAAGCAAAGGTGTGAACATAAAGTATGAAGTTAGGGACAATAGAAATGGGTACAAAGCAGGAGCTTTAAAGGAGGGAATAAAGCATAGCTATGTCATACAATGTGATTATGTTGCAATCTTTGATGCTGATTTTCAACCAGAACCTGATTTTCTCTGCCAAACCATCCCTTTCCTTGTCAATAATCCTGAAATTGGTCTCGTTCAGGCTCGCTGGAAATTTGTGAATGCCGATGAATGTTTGATGACTAGAATGCAACAAATGTCACTTGATTACCATTTTAAGGTGGAACAAGAAGTGGGGTCTTTCACTTATGCCTTTTTTGGCTTCAATGGGACTGCGGGTGTATGGAGAATTTCAGCACTGAATGAAGCTGGTGGGTGGAAAGATAGGACCACCGTTGAAGATATGGATTTGGCCGTCCGTGCTAGTCTTAAGGGATGGAAATTCTTATACCTCTCTAGTGTACAGGTTAAAAACGAATTGCCAAGTACATTAAAGGCTTATAGATACCAACAACACAGATGGTCATGTGGACCAGCTAATCTTTTCAGAAAAGTAGTTATGGAGATTTTCACAAACAAGAAAGTGTCTTTGTGGAAGAAGTTCCACGTTGTTTACAGTTTTTTCTTTGTTGCGAAGATTGTGGTTCACATAAACACATTGGTGTTCTATTGCATTGTGTTACCTGCAACCGTTATGGTGCCTGAGGTTGTGGTCCCTAAATGGAGTTGTGTTTATATCCCTTGCATCATTACCCTTCTAAAAGCTGTCGGAACTCCAAGgTCATTCTATTTGCTTATCTTTTGGGTTCTCTTTGAGAATACTATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTATTAGAGGCTAGTAGAGTGAATGAATGGGTTGTCACTGAAAAACTTGGAGATGCTCTTAAAGATAAAGTTGGTGGTAGTAAAGTACACAAAAAACATCGATTTAACATTGGTGAAAGGATTGAAATGACAGAACTTTTAGTTGGATTCTACCTCCTATATTGTGGCTGCTATGATGTTATGTATGGGAAAAGTTACTTCTTCATATTCCTATACATGCAAGCGATTACTTTCTTCATCCTGGCATTTGGATATATTGGCACCTTTGTTCCCAAATCCTAG 1281 0.3911 MQVYQLSIGAACGLSWPSDRIIIQILDDSTDQTIKELVQVECRKWESKGVNIKYEVRDNRNGYKAGALKEGIKHSYVIQCDYVAIFDADFQPEPDFLCQTIPFLVNNPEIGLVQARWKFVNADECLMTRMQQMSLDYHFKVEQEVGSFTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSSVQVKNELPSTLKAYRYQQHRWSCGPANLFRKVVMEIFTNKKVSLWKKFHVVYSFFFVAKIVVHINTLVFYCIVLPATVMVPEVVVPKWSCVYIPCIITLLKAVGTPRSFYLLIFWVLFENTMSLHRTKATIIGLLEASRVNEWVVTEKLGDALKDKVGGSKVHKKHRFNIGERIEMTELLVGFYLLYCGCYDVMYGKSYFFIFLYMQAITFFILAFGYIGTFVPKS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02271 426 CDD CESA_CaSu_A2 3 225 - -
Tsu01g02271 426 Pfam Glycosyl transferase family group 2 82 293 IPR001173 -
Tsu01g02271 426 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 2 425 - -
Tsu01g02271 426 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 264 IPR029044 -
Tsu01g02271 426 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 208 IPR029044 -
Tsu01g02271 426 PANTHER - 2 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02271 Tsu-Chr1 23981787 23997072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02271 2 425 Miscellaneous Gene Families AT5G03760 74.764 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02271 K13680 - gmx:100782772 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02271 01 23981787 23997072 Tsu01g04019 01 47979465 47982514 ECH
Tsu01g02271 01 23981787 23997072 Tsu01g02271 01 23981787 23997072 ECH