Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02262 ATGTTAAAGTTAACTTTGTATCTTGTTAATGATGCATACCAGGTGAATGGCTGCCTATCATACTCCGACAAAATTCCTGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACTGTGTGCACTGATCTGCAGGAAAACAGCCGAATCCCATCAGTTGATAGTCTAAAGTCTGTACATCCCCGCATTGATTCTTCCCTTGAAGTAGTTTTGGTGGATCGGCGCAGTGATGCCAGCTTGAGAGAACTGCAAAACATGGTTCATAACATTTCTTGTAGCAGCATAACAACAACAGAGGTTGTGGATCAGCTGTCCAAGCTGGTTTGCAACTGTATGGGGGGTGCAGCTTCTGCTGGGGAGGATGAGCTTCTTTCTTTTTGGAGGGATTGCAGTAATAATCTGAAAGATTGCTTAGGATCTGTTGTTTTCCCCATAGGTAGTCTATCTGTTGGCCTTTGTAGGCACCGTGCCATATTATTCAAAgtacTAGCTGATGCCATTGATTTACCATGTCGAATTGCAAAGGGCTGTAAATATTGCAAAAGAGATGATGCTTCTTCTTGTCTTGTTAGATTTGGGCTTGAGAGGGAATATCTTGTTGATTTAATTGGGAAGCCAGGACACTTATGCGAGCCTGATTCCTTGCTCAACGGTCCAGCTTCCATCTCATTTTGTTCACCCTTGCGTTTTCCAAGACTTAAACCAGCTGAAACTCCAATTGATTTCAGGTCACTTGCCAAACAGTATTTCTCAGACTGTCTGTCTCTTGAGCTTTTCTTCGACAACAGTTCTGCAGAACAGTTCGATGCGAAATGCAATGAAAGGAATAACGCTAGGCCGATTTCAACTGACAGTAATAGAAGCTCCCATCTTCCTTTGTATCCACAAGTTTCTCTGATGAGCACTCAGGATCAAGCTTCTGAAACATATATGTTATGTAACCCCCCTCAGAACATTACAGACTCAACAAATGTGGGCAAGTATCCACCCCCTTTAAAGCATAAGCGTCCTGTTGCTATTGCCAATGATGAAGTCATTGAGGGTAGGAGGTTTATTGAAGCAAGTCAACTGATTCCCAGCAAGCCTACTCGAGATGTTGCCTTTGACATGGAGGATTTGGCCATACCATGGAACGatcttattttaaaagaaaaaataggaTCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGgaTGTTGCTGTGAAAATTTTGATGGAGCAAGATTTTCATGCTGAACGCTTCAAGGAATTCATGCGGGAGGTTGCAATAATGAAACATTTGCGGCATCCAAACATTGTTTTATTAATGGGGGCAGTCACACAACCTCCTAACTTATCAATTGTCACCGAATATTTATCAAGGGGTAGCTTATATAGGCTATTGCATAGACCTGGTGCCAAGGAAGTGTTGGATGAGAGGCGTAGGCTTAGTATGGCTTACGATGTGgcAAAGGGAATGAATTATCTTCACAAGCGTAACCCCCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATACACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGCTTAAAGGCCAATACATTTCTCTCTTCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGCGACGAGCCATCAAATGAGAAGTCTGATATTTACAGCTTTGGTGTAATCATGTGGGAGCTTGCAACATTGCAACAGCCGTGGGGTAATTTGAATCCGGCACAGGTTGTTGCTGCTGTTGGCTTCAAGGGAAAAAGACTTGAGATCCCACGCGAGTTGAATCCCCAAATAGCTGCAATAATTGAGGCTTGCTGGGCCAATGAGCCCTGGAAACGCCCTTCTTTTGCCAGTATTATGGACTCTCTGAGGTCATTACTCAAACCCCCTACACCTCAACCTGGTCTTCCAAACATACCATGTCTCACCTGA 1971 0.4323 MLKLTLYLVNDAYQVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLQENSRIPSVDSLKSVHPRIDSSLEVVLVDRRSDASLRELQNMVHNISCSSITTTEVVDQLSKLVCNCMGGAASAGEDELLSFWRDCSNNLKDCLGSVVFPIGSLSVGLCRHRAILFKVLADAIDLPCRIAKGCKYCKRDDASSCLVRFGLEREYLVDLIGKPGHLCEPDSLLNGPASISFCSPLRFPRLKPAETPIDFRSLAKQYFSDCLSLELFFDNSSAEQFDAKCNERNNARPISTDSNRSSHLPLYPQVSLMSTQDQASETYMLCNPPQNITDSTNVGKYPPPLKHKRPVAIANDEVIEGRRFIEASQLIPSKPTRDVAFDMEDLAIPWNDLILKEKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFMREVAIMKHLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHRPGAKEVLDERRRLSMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDIYSFGVIMWELATLQQPWGNLNPAQVVAAVGFKGKRLEIPRELNPQIAAIIEACWANEPWKRPSFASIMDSLRSLLKPPTPQPGLPNIPCLT 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02262 656 Gene3D Transferase(Phosphotransferase) domain 1 461 645 - -
Tsu01g02262 656 Pfam Protein tyrosine and serine/threonine kinase 383 636 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 PRINTS Tyrosine kinase catalytic domain signature 563 585 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 PRINTS Tyrosine kinase catalytic domain signature 544 554 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 PRINTS Tyrosine kinase catalytic domain signature 497 515 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 PRINTS Tyrosine kinase catalytic domain signature 456 469 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 PRINTS Tyrosine kinase catalytic domain signature 607 629 IPR001245 GO:0004672|GO:0006468
Tsu01g02262 656 CDD STKc_MAP3K-like 388 636 - -
Tsu01g02262 656 ProSiteProfiles Protein kinase domain profile. 382 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02262 656 SUPERFAMILY Protein kinase-like (PK-like) 358 635 IPR011009 -
Tsu01g02262 656 Pfam Ethylene-responsive protein kinase Le-CTR1 11 212 - -
Tsu01g02262 656 ProSitePatterns Protein kinases ATP-binding region signature. 388 409 IPR017441 GO:0005524
Tsu01g02262 656 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 644 - -
Tsu01g02262 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Tsu01g02262 656 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 13 644 - -
Tsu01g02262 656 Gene3D Phosphorylase Kinase; domain 1 375 460 - -
Tsu01g02262 656 SMART serkin_6 382 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02262 Tsu-Chr1 23881751 23892293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02262 9 647 MAP Kinase Kinase Kinase AT5G03730 67.543 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu01g02262 PK_Tyr_Ser-Thr 4.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02262 K14510 - gmx:100775768 1115.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02262 01 23881751 23892293 Tsu01g02262 01 23881751 23892293 ECH