Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02258 atgtcgACATATAGTGAAGAAACGTTGCATCTTGATAGTGATATAGAAGGGGAAGAATTCACCAGTGGCGATGGCATTGATAGTGATAGAGATGAATTGGGGGAAGAGAATTGTGGCATTGGTACTGATAGAGATGAATTGGGGGAAGAGAATTGTGGCATTGGTATTGATAGAGATGAATTGGGGAAAGATAATTGTAATGAGAAAAAATGCTTAAGTGAAATTACAGATGATGATATAAGAGCTATGGAATTTAGCACAGAGGAAGAAGCTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTTTATAAAGCGTATGCACATTCCCAAGGATTTGCCATAAGGAAGGATGATGTGAAACGTaatgatgagaatgaaattGTTTCGCGTCGATTACTTTGCAATAAAGCGGGTAAgagtgagaggaaaaataagaagaatGAGGATAGACATAGGCCAACTATGCGAACTGGCTGTCTTGCTAGACTTCGAGTAGCTTATGATATCATTCGTAAGATTTGGAAAGTTACTATGTTTGAGCCCTCTCACAACCATGACTTAACTCCTGCACATTTTGTTCACTTGATTCCTAATTATCGTAAGTTGAGTGAAGCAGATAAGAAGATTGTCAATGGTTTGCATTCACAGGGTGTTAGAACATGTCATATTATGGGTTTTTTGATGGATCAAAAAGGAGGTCATGAAGATCTTGGTTTTATCAAAAAGGACTTGTATAACTACACAGATCATCAAGGAAGGGTTAGAATTGAAGACGGGGATACTTTCGCTACTTTGAGTTATTTTCAAGGTAAAGCTGATGGTGATTCAGACTTTTTTTCAGAGTTCACCTTTACAGATGATGGGCggttagaaaatattttttgggcAGATTCTACCAGCAAGCTTGATTATGAATGCTTTGGCGATGTGGTTGCATTTGACACCACATATAAAAAGAACAGATATGGCAAGCCGCTTGTAATTTTTAGTGGATACAACCACCATGGAGAAACAACCATTTTTGCATGTGCTTTAATTTGCAATGAGACAACAGAAACATATAAGTGggttttaaatatgttttcaaagtGCATGTACAATAAATATCCAAAAGCAGTTGTTACAGATGCAGATAAATCAATGAGGGAAGCCATTAGAGTTGTATTTCCAAATTCAAAACACCGTCTTTGTTCATGGCATCTACATAGAAATGCTCGTGTacatataaaagataaaaaattctTAGAAGAGTTTAAGACACTAATGTATTCTACCTATACACCTGAAAAGTTTGAGTCTGAGTGGAAGAGGGTTGTTGAGACTTATGGTGTATCAAAGAATAAGTGGGTCCTGAAAACATATGAATTGAAGCAAATGTGGGCAAGTGCATACATGCGAGATCATTTTGTGTGTGGAGTTCGAACGACGTCGATTTGCGAAGGTGTGAATTCGTTTATCAAGAAAtatgttcaaaacaaaaatagccTTGTTGATTTCTTGCATAATTTTGAAAGAGCTCTCAAAGACTACAGACATAATGAATTAGTGTCTGATTTCAAATCGTTTTATTATCAACCTGTGTTGACAACTTCCTTGGAGGGATTTGAGCTTGGAGCATCAAAGATATTCACTTCTAAAAAGTTCAGAGATGTAAAAAAGGCGATAGAGAATGTTGCTGCGTTATCTGTCACTGAACGAACTGTGGATGgaaacaatttaattttcagGGTTAACGTATACCGCAACAAAGATGCAGTTTTTTGGGTTCATCTTGACAAGGTGcagaataaatttttatgtgatTGTAGACGATTTGAACGCAGAGGACTTCCATGCTCCCACATTATTTCTGTCATGAAGTATGAGGACATGGATGCTTTTCCAGAAAGTCTGATTTGCAAGAGATGGACAAAAACAGCAAAGAAGGATCACATCTCATCATTTGCCTCCAAAGATGTTAATAATGAGGAAAAAATGGTCATGTTCCGTAGAGGGGCACTTGTCGCTGCGTTCAATAGGCTATGTGAGGTTTCGTGTATGAGTGTCAATGATTATAAGGAAGCTTTGGAAGGGATTAATAGTTTGTGTGACAAGATGAACAAACGTCGTGAGGGAAATGTCAATGGCAATAATAAGGCCAATAAATCTGTTGCTGGTGATCCGCAGAATGTGAAGCCCAAAGGTGcccctaaaataaaaaagtcacGTAGGAAACAAGGAAGTTGTACTCATTGTAGAATGCCTGATCACACAATACAGAGGTGTCCAGTACTTGCTAGAAATGATGTTGATGAGGAGCAAAGGGCGGAGGAGGAAAAGAAGGATGAAGATTCAATTGCTGAATATGTATCTGTAAGCAACAAGATGAATGACAAAAAACACTCTGTATCAGTACCAAATGGTATTAAACGTATGAGAGAAGATGACAATGTTGTTTTTTCAACACAAGACGTTGTGAATAAAAGAACGGCAAATATAGACACTAGAAAACTTGATGCTTCTGTGACTCCGAATATCAAAATTAACATTGAAAACAACGGTGTACCACATGAATTTGGATATGATGTTAGTCGCACCATCAAACACGAAATTTATGAGCGTGTTGAAGGACGTAGAGCGTTCAGCAAAACATCGGAATTAAGGACAATATATGACATTTTATGTTTATGCCGCTTCTTCTGTACCAAACGGAATGTTGGCTGGTTTTGTGTACCAAAAGGCATTAAGAGGCTTAATTAG 2886 0.334 MSTYSEETLHLDSDIEGEEFTSGDGIDSDRDELGEENCGIGTDRDELGEENCGIGIDRDELGKDNCNEKKCLSEITDDDIRAMEFSTEEEAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFYKAYAHSQGFAIRKDDVKRNDENEIVSRRLLCNKAGKSERKNKKNEDRHRPTMRTGCLARLRVAYDIIRKIWKVTMFEPSHNHDLTPAHFVHLIPNYRKLSEADKKIVNGLHSQGVRTCHIMGFLMDQKGGHEDLGFIKKDLYNYTDHQGRVRIEDGDTFATLSYFQGKADGDSDFFSEFTFTDDGRLENIFWADSTSKLDYECFGDVVAFDTTYKKNRYGKPLVIFSGYNHHGETTIFACALICNETTETYKWVLNMFSKCMYNKYPKAVVTDADKSMREAIRVVFPNSKHRLCSWHLHRNARVHIKDKKFLEEFKTLMYSTYTPEKFESEWKRVVETYGVSKNKWVLKTYELKQMWASAYMRDHFVCGVRTTSICEGVNSFIKKYVQNKNSLVDFLHNFERALKDYRHNELVSDFKSFYYQPVLTTSLEGFELGASKIFTSKKFRDVKKAIENVAALSVTERTVDGNNLIFRVNVYRNKDAVFWVHLDKVQNKFLCDCRRFERRGLPCSHIISVMKYEDMDAFPESLICKRWTKTAKKDHISSFASKDVNNEEKMVMFRRGALVAAFNRLCEVSCMSVNDYKEALEGINSLCDKMNKRREGNVNGNNKANKSVAGDPQNVKPKGAPKIKKSRRKQGSCTHCRMPDHTIQRCPVLARNDVDEEQRAEEEKKDEDSIAEYVSVSNKMNDKKHSVSVPNGIKRMREDDNVVFSTQDVVNKRTANIDTRKLDASVTPNIKINIENNGVPHEFGYDVSRTIKHEIYERVEGRRAFSKTSELRTIYDILCLCRFFCTKRNVGWFCVPKGIKRLN 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02258 961 PANTHER OS02G0262500 PROTEIN 150 752 - -
Tsu01g02258 961 MobiDBLite consensus disorder prediction 1 46 - -
Tsu01g02258 961 ProSiteProfiles Zinc finger SWIM-type profile. 636 672 IPR007527 GO:0008270
Tsu01g02258 961 Coils Coil 92 92 - -
Tsu01g02258 961 MobiDBLite consensus disorder prediction 750 826 - -
Tsu01g02258 961 Pfam SWIM zinc finger 649 668 IPR007527 GO:0008270
Tsu01g02258 961 MobiDBLite consensus disorder prediction 9 46 - -
Tsu01g02258 961 MobiDBLite consensus disorder prediction 808 826 - -
Tsu01g02258 961 SMART 26again6 647 674 IPR006564 GO:0008270
Tsu01g02258 961 Pfam MULE transposase domain 359 453 IPR018289 -
Tsu01g02258 961 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 150 752 IPR031052 GO:0006355
Tsu01g02258 961 Pfam FAR1 DNA-binding domain 151 237 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02258 Tsu-Chr1 23861296 23864867 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g02258 MULE 4.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02258 - - ccaj:109792835 662.144