Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02252 ATGGAGGACCACCATAACAATCATGgtcaccaccaccatcaccatcatcatcatcaacaacaacaacaatatggAAGCATGACAACTGATCTAAGACAACTAGTAAATGGAACAAGGTCAACCCATTTTCCATCTATGCCGGCTACCGCGGAGGATTTTTTCCCCGGTCACCGGAATCTGACTGCTTTGTTAACTAATACTACACAAACACATCATCAaaatgaacaacaacaacaatatgaGATGATGATGTTGGGTCGTGGAGTTGTGCTTGAAGATTTCAATAATATTACTAATACTCATCATCATgttccaccaccaccaccaccaccgacGACGACAACAACTACAACAGCTAGTGCTAGTGTTTCAACACCTGAGGCCACAGGATGTATTGGTGGAGATGCATCCACTGGAAGATGGCCCAGACAAGAAACTCTTACTCTTCTTGAGATCAGATCTCGTCTTGACCCTAAATTTAAAGAAGCTAATCAAAAGGGTCCCTTATGGGATGAAGTTTCTAGGATAATGTCTGAAGAGCATGGATATCAAAGGAGTGGAAAAAAGTGCAGGGAGAAATTTGAGAACTTATACAAGTATTACAAGAAGACAAAAGAAGGTAAAGCAGGAAGGCATGATGGGAAACATTACAGATTCTTTCGTCAACTTGAAGCTTTATATGGTGAAAACAGTAACCAAACTTCTGTACCAGAAACCAATTTTGTCAACTTCAACAATTTCCAAAATCCCtcaaaaaatacaaatcaagACATTAGTCTCAGTCTCACTAACTCAACTGATTTTGACACTTCATCATCTGATGATGAGAATGATGAGAAAGGAAAGAGAAAGAGTAGTGGAAGGAGAAGTTGGAAAGTTAAGATAAAAGAGTTTATTGATTCTCAAATGAAGAAGCTTGttgagaagcaagaagagtgGTTGAGTAAGCTTGTGAAGACACTTGAGGAGAAGGAAAATGAGAGGGTTTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGGGAAAAGGGTAGAAAAGGAACAAAAGTTTTGGAGTAAAGAGAGAGCATGGATTGAATCAAGGGATGCTGCTTTAATGGAAGCTTTGAAGAATATAGGAGGAAGGGAAATGAAAGTTGAACATGATCAAGCTCATGATCATCATAAGGGTATAAATGTAATAAATGAAGCTGAGATTCATCAAAACAACTTTGAAAACCAAAATGAAGATGGTAGTGAAATCTTGAATTGTAATGTGAGAGGTTCTGATAACTATCCAAGGGATTCTTCTAAAGAAGGAAataagaagagaaaagagaatTTCTACTTCAACAATAATGAACAATGTTCTATGTACAATCAAGGAAGTAGTTTTTGTGATGTGAATGATCAAAGAGAAGAGATTGTGAAGCTCCAAAGGAATGATCATGGTTCTTCACCTTCTGATTCTAATGTTGGAAATGTTGCTAATGGTGATACTTGTTTTCCTTTCTTGCTTAATGAGGGTGGAAATTTGTGGGAGAATTTTGGTTtgaaaatcaataaatcaaacCAAAATCATTGA 1560 0.3327 MEDHHNNHGHHHHHHHHHQQQQQYGSMTTDLRQLVNGTRSTHFPSMPATAEDFFPGHRNLTALLTNTTQTHHQNEQQQQYEMMMLGRGVVLEDFNNITNTHHHVPPPPPPPTTTTTTTASASVSTPEATGCIGGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSVPETNFVNFNNFQNPSKNTNQDISLSLTNSTDFDTSSSDDENDEKGKRKSSGRRSWKVKIKEFIDSQMKKLVEKQEEWLSKLVKTLEEKENERVLREEEWRKQEGKRVEKEQKFWSKERAWIESRDAALMEALKNIGGREMKVEHDQAHDHHKGINVINEAEIHQNNFENQNEDGSEILNCNVRGSDNYPRDSSKEGNKKRKENFYFNNNEQCSMYNQGSSFCDVNDQREEIVKLQRNDHGSSPSDSNVGNVANGDTCFPFLLNEGGNLWENFGLKINKSNQNH 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02252 519 Gene3D - 141 203 - -
Tsu01g02252 519 Pfam Myb/SANT-like DNA-binding domain 140 226 IPR044822 -
Tsu01g02252 519 MobiDBLite consensus disorder prediction 252 270 - -
Tsu01g02252 519 CDD GT1 140 205 - -
Tsu01g02252 519 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 428 510 - -
Tsu01g02252 519 PANTHER - 428 510 - -
Tsu01g02252 519 MobiDBLite consensus disorder prediction 252 286 - -
Tsu01g02252 519 MobiDBLite consensus disorder prediction 99 140 - -
Tsu01g02252 519 MobiDBLite consensus disorder prediction 417 436 - -
Tsu01g02252 519 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g02252 519 Coils Coil 307 334 - -
Tsu01g02252 519 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 39 415 - -
Tsu01g02252 519 ProSiteProfiles Myb-like domain profile. 133 198 IPR001005 -
Tsu01g02252 519 PANTHER - 39 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02252 Tsu-Chr1 23795160 23798710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02252 426 514 Trihelix Transcription Factor Family AT5G03680 35.238 3.66e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu01g02252 Myb_DNA-bind_4 2.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02252 - - mtr:MTR_1g060990 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02252 01 23795160 23798710 Tsu01g02252 01 23795160 23798710 ECH
Tsu07g03984 07 45901645 45904458 Tsu01g02252 01 23795160 23798710 PCT