Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02247 atgaataaaagaaGAGCTGGAAGGAAGAAATTCCATGAGACTCGACATCCAATTTACAAAGGAGTGAGacaaagaaatggaaaatgggTGTGTGAGATACGACAACCTAACAACAAAACTCGTGTTTGGCTTGGAACATTTTCTCAACCTGACATGGCAGCTATAGCTTATGATGTTGCTGCTTTAGCTTTCAAAGGTGAAGATGCTTCCTTAAATTTTCCTCATTCGGCTTCCTCGTTGCCGCGTCTTAATTCACAAACATCTTCTATTAGTTCTATTCAGTTTGCCGCGACAAAAGCGgctaaaaaacatttttcttcatgTGAGGATTCAAAATCATTTCTTGTGGAGATTACAAAGAATgattctgaatcctccttggaGAAGTCTTTTTCTAAAAGCTTTTTTTGGGATGAGGAGGAGGTTTTCAACATGCCGGGGTTGATAAATAGCATGGCAGAAGGGTTGCTAATTACACCACCGGCGCTGCAGAGAGGTTTCAATTGGGTTGATGGGGATTATACCATGGATTTGACTCTATGggaaaattaa 552 0.3514 MNKRRAGRKKFHETRHPIYKGVRQRNGKWVCEIRQPNNKTRVWLGTFSQPDMAAIAYDVAALAFKGEDASLNFPHSASSLPRLNSQTSSISSIQFAATKAAKKHFSSCEDSKSFLVEITKNDSESSLEKSFSKSFFWDEEEVFNMPGLINSMAEGLLITPPALQRGFNWVDGDYTMDLTLWEN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02247 183 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 PRINTS Ethylene responsive element binding protein signature 56 76 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 ProSiteProfiles AP2/ERF domain profile. 18 74 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 182 - -
Tsu01g02247 183 SMART rav1_2 18 80 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 182 - -
Tsu01g02247 183 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
Tsu01g02247 183 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Tsu01g02247 183 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02247 Tsu-Chr1 23735908 23736459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02247 3 181 AP2-EREBP Transcription Factor Family AT5G51990 46.524 3.43e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02247 AP2 4e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02247 - - gmx:100778541 270.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02247 01 23735908 23736459 Tsu01g02247 01 23735908 23736459 ECH
Tsu01g02247 01 23735908 23736459 Tsu07g03985 07 45915703 45916317 PCT