Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02246 ATGGCAGCAGCAGCAGCTCAGAAGCACTTACACGAACTACTCAAAGAAGATCAAGAACCATTTCTTCTAACAAACTACATTTCAGAAAAACGTATTAATTTACTAAAAAGACCTTCCACAAACACCACTTTacaattgaagaaacaaaaaccaccaccaccaccaccaacaacaacaaccgtTAATCTCTGCAGAAATGCTTGTTTTTTCTCATTCCAAAACACACCAGATATAAAAAATTCACCACTTTTTGAATTCTCTTCACCAACAAAAACCCCATCTTCTTCCAATGCTATCTTCCTTCAAATCCCTACTAAAACGGCGTCGCTTTTACTCGAAGCAGCTCTCAAAATTCAGAATAAtaaaaaacccaaaaacaaaaacaaatcttttGGGGTTTTTGGTTCATTGTTGAAGAAACTAACACAAcgaaacagaaacaaaaatgaaggtaataataataatgtttctGTTAAGGATATTTTGAGATGGGATTCTTCAATTGGAAAAAGAGATAGAAAATGTTACAATGAAATAAGAGTGTGTTCATGTGAAGTGGGGTTTACATGTTCTTCTTGCAATGGAAGAAATAGTAGTAGTGCTGTTTGGTCTGAAAGTAATGAAGATAAATCGATAGACATGGAAACTTCGAGTAGTGGAAATtcttgtgattttgttgaagagtTTGTGATGAATAAGAAGAAACAGAATGAAGATTGTGTTTGTTTTGATCATCGTGGGTTTTTCTGTGAAAGCCCTTTTCGTTTTGTTCTTGATAGGAGCGCGTCTTCTTCCACTGGCCACCGTACGCCGGAGTTTTCTTCTCCGGCGGATTCACCTAGTCGCCGCAAAACAGAGGACAAAGAAAATAATGGAGATGACGGTGTGAACAAATTCCAATCAGGTGAAGATGAGGAAGAGAAGGAACAGTGTAGTCCAGTATCTGTTTTAGATCCACCCTTTCaggattatgatgatgattgcCATGAAAacgattatgatgatgatttggagtGTAGCTACACCAATGTACAAAGAACCAAGCAACAACTATTAGATAGACTTCGTAGATTCGAGCAACTTGCAGAATTAGATCCACTAGAACTCGAGAAAAGAATGCAAGAAGATAACGAGTATGAAACATTTttcgaagatgatgatgaagatgaaagtGATGCACCATATGAAGAAAAGGCTCTAAGAGAAATAGTCAATGAAATCATGTGCCATTCAAGTGTTCATGATAGATGGCAAGACCAAGAAGTTCTTAAGAGACTTGTTTATGATCTCAttaaggaagaagaaaaagaacttAATTGTTCACAAGATATGAACAATGTAATGAAAAGGGTATGCAAGAAGATGGAGTTGTGGAAAGAAGTGGAATCTAACACTATTGATATGATGATAGAAGAAGATTTTACTAGAGAGGAAATTGGGTGGAAGAAAAATGATGAGGAGACAAAAGAGTTAGCTAGAGAGGTTGAGCTTGCTATCTTTTGCTTTTTAGTTGATGAATTTTCAGAGGAATTagtatgttaa 1542 0.3113 MAAAAAQKHLHELLKEDQEPFLLTNYISEKRINLLKRPSTNTTLQLKKQKPPPPPPTTTTVNLCRNACFFSFQNTPDIKNSPLFEFSSPTKTPSSSNAIFLQIPTKTASLLLEAALKIQNNKKPKNKNKSFGVFGSLLKKLTQRNRNKNEGNNNNVSVKDILRWDSSIGKRDRKCYNEIRVCSCEVGFTCSSCNGRNSSSAVWSESNEDKSIDMETSSSGNSCDFVEEFVMNKKKQNEDCVCFDHRGFFCESPFRFVLDRSASSSTGHRTPEFSSPADSPSRRKTEDKENNGDDGVNKFQSGEDEEEKEQCSPVSVLDPPFQDYDDDCHENDYDDDLECSYTNVQRTKQQLLDRLRRFEQLAELDPLELEKRMQEDNEYETFFEDDDEDESDAPYEEKALREIVNEIMCHSSVHDRWQDQEVLKRLVYDLIKEEEKELNCSQDMNNVMKRVCKKMELWKEVESNTIDMMIEEDFTREEIGWKKNDEETKELAREVELAIFCFLVDEFSEELVC 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02246 513 MobiDBLite consensus disorder prediction 279 312 - -
Tsu01g02246 513 Coils Coil 341 361 - -
Tsu01g02246 513 MobiDBLite consensus disorder prediction 261 278 - -
Tsu01g02246 513 MobiDBLite consensus disorder prediction 39 58 - -
Tsu01g02246 513 PANTHER - 6 513 - -
Tsu01g02246 513 MobiDBLite consensus disorder prediction 261 329 - -
Tsu01g02246 513 MobiDBLite consensus disorder prediction 195 220 - -
Tsu01g02246 513 PANTHER OS04G0572500 PROTEIN 6 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02246 Tsu-Chr1 23709800 23715510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02246 5 347 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 40.761 2.94e-53 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02246 - - lang:109335034 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02246 01 23709800 23715510 Tsu01g02246 01 23709800 23715510 ECH
Tsu07g03987 07 45930592 45934245 Tsu01g02246 01 23709800 23715510 PCT