Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02240 ATGGGATCATTCTCGGGCACTTGTGAAATTGTTGAAGCAAGGGAAGACCTAAATACAGCGAAAGATGCAGGGATATATCCGTCCAGTTCTGGATATAGTGTGTCTGAGAAAAATCAGAAGCTTTCTCCGCTGAAACTGGGATACAAGGATAATCTAGATAATGATATTAATAAGCTGTTTGAATCAATTACTCTCAAGTCTTCATCAAGGGATTTGAGCTTTCTACCAGATGGAACAAGTCCTAATATGAGAAGTGCATTAAAAAAGCCAATGACAATGGGTGTGCCTCGATCCCCACGAGTTGGGATTTCTGAGCCGGTGACTTTGAAGCAGGCATTACGAGACCTGTGTATATCTAAGGCATCAGAAATGGCTGCTATGAAAAGGTTATCAAAGTCAGCAGCTTCTCCAAGAATATCAGAGGCTGGGAAGATACAGACGTTGTACAATTCGGTTGTCACTGATGCTAGGAGATCTGGGCCTTCTAATGTTGAGAGTAAAGGGAGTTCAACTGAAATATCTCTGGTGGTAGAAGAAAACAAGTCACTTGCCTTGAATGAAGAATCTCAGTCTCATCAAACTTCGAAAAGCACGTTGTTGGGCCAAAATGCTCATTCTTCCAAAATCGCAGTTGCAACTTCACAAAATGATACAGGGGCTTCATTGATGCAAAGTGATTTGGAATGTTCGTCAAGTAAAGTCGGGGTTTCAGCCCAACCATCAGAACCTACTCAAATAGAAAATCAAGTATCTGCTTCCTCTCCATCATGTTGTAACACCAATGGAAGCAAAGTAGAGTTGCCTGAAAAAGATTCTTCACCTAAAAAATTAGGAAATAAAGCATCAATGTCGAAGAATGTGCGGAAAGGTATACAAACAGTATCTTCCTCTTCAGTGAATGGCAATAGAGTGTGCAAACTTTCACGCAATAGCCCCCGAACAGTAAAATCGGTCATAAAAACCAAGAGTTTGGGTAAGAAGAAACTAAAGCAGGGTTCTGATTCTGCTTTACATGTTCCTCCATCCAATGAGGGAAATAACAACCCAGTTCCCACTGCAACTCCACTTGTTTGTGAGAGATGTTGGTGTGAAATCGAAAATGCAAATATAGAAAGCAGCAAAGGTATTATATCATCGGGCTCTCCAAGCCCTGCAGATGGAATAAACTTGAAAAGTGGACTCTCCGGGCCAGCATCAACTGGTTGTAATAGAGGCATAGAAGTTGCAAAAGTGAAAAAGAATACCAGATTGAAAGAGCAGCTTGAATTTTCACAGAGTTCAAAGAGTAGCCATGGTGACTACAGTAGTAGTACAAGTACCAGCGACGAGAGTAATATCAGTGGTTCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGATTTTAGATGGCAAGCCATACGAGATGCTCAAATGCAGCATGGTGTCTTGGGCTTGAGAAACTTCAATCTTTTGAAGAAACTTGGTTGTGGAGACATCGGTACTGTATATCTTTCTGAACTAATTGGccaaaattgtttgtttgctaTTAAAGTAATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAACTGAAAGGGAAATATTACGAATGCTGGATCATCCTTTTCTTCCAACACTGTATGCACAGTTTACATCAGAAAATTTGTCATGTCTGGTCATGGAGTATTGTCCTGGAGGAGATCTTCATGTTCTACGTCAGAAACAGCTTGGTAGATGTTTTTCGGAGCCAGCAGCAAGGTTTTACGTAGCTGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGTGATTTGAAACCAGAAAACATTCTTGTTCGAGAAGACGGTCACATTATGCTCACAGATTTTGACCTTTCACTCAGGTGTGACGTTAGCCCAACACTTCTGAAATCATCTTCTGATATAGATCCTGCCAAGGTTTCTGGTACATGCACAAAGTCAAGCTGCATTGAGCCATTCTGCATTGAACCATCTTGTCAAGTTGCATGCTTCAGTCCTAGATTCTTACCACCTGCTGCAAAAGCAAGGAAACTAAAAGCTGATCTTGCTGCTCATATCAGATCATTGCCGCAGCTTGTGGCAGAGCCCACGGATGCAAGATCAAATTCCTTTGTTGGTACTCATGAATACCTAGCACCTGAGATCATCAAAGGAGAAGGACATGGAGCTGCAGTTGATTGGTGGACATTTGGTGTTTTTCTTTATGAGCTTTTATATGGTAAAACACCCTTCAAAGGTTCTAACAATGAAGAAACATTAGCCAACGTCGTCTTGCAAAATCTGAGATTCCCTGATAGCCCATTTGTTAGTTTCCAAGCAAGGGATCTTATTAAAGGGTTGTTAGTTAAAGAGCCTGAAAACCGTTTAGGTACAGAGAAAGGCGCTGCTGAGATTAAACAACATCCCTTCTTCGAGGGCCTTAATTGGGCATTAATACGTTGTGCTATCCCACCAGAACTTCCCGACCTTTGTGAATTTGAGTTGGGACTTTCAGACATGATCGCACAGTCACAAAGCAAGGATGGCAAATTTTTAGAGTGTACAACAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAG 2607 0.412 MGSFSGTCEIVEAREDLNTAKDAGIYPSSSGYSVSEKNQKLSPLKLGYKDNLDNDINKLFESITLKSSSRDLSFLPDGTSPNMRSALKKPMTMGVPRSPRVGISEPVTLKQALRDLCISKASEMAAMKRLSKSAASPRISEAGKIQTLYNSVVTDARRSGPSNVESKGSSTEISLVVEENKSLALNEESQSHQTSKSTLLGQNAHSSKIAVATSQNDTGASLMQSDLECSSSKVGVSAQPSEPTQIENQVSASSPSCCNTNGSKVELPEKDSSPKKLGNKASMSKNVRKGIQTVSSSSVNGNRVCKLSRNSPRTVKSVIKTKSLGKKKLKQGSDSALHVPPSNEGNNNPVPTATPLVCERCWCEIENANIESSKGIISSGSPSPADGINLKSGLSGPASTGCNRGIEVAKVKKNTRLKEQLEFSQSSKSSHGDYSSSTSTSDESNISGSSCGNRPHMSKDFRWQAIRDAQMQHGVLGLRNFNLLKKLGCGDIGTVYLSELIGQNCLFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTLYAQFTSENLSCLVMEYCPGGDLHVLRQKQLGRCFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVSPTLLKSSSDIDPAKVSGTCTKSSCIEPFCIEPSCQVACFSPRFLPPAAKARKLKADLAAHIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGKTPFKGSNNEETLANVVLQNLRFPDSPFVSFQARDLIKGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFELGLSDMIAQSQSKDGKFLECTTTGEQVEFELF 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02240 868 MobiDBLite consensus disorder prediction 277 305 - -
Tsu01g02240 868 ProSiteProfiles Protein kinase domain profile. 481 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02240 868 MobiDBLite consensus disorder prediction 336 350 - -
Tsu01g02240 868 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 868 - -
Tsu01g02240 868 SMART serkin_6 481 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02240 868 SUPERFAMILY Protein kinase-like (PK-like) 457 829 IPR011009 -
Tsu01g02240 868 Gene3D Phosphorylase Kinase; domain 1 479 560 - -
Tsu01g02240 868 MobiDBLite consensus disorder prediction 320 350 - -
Tsu01g02240 868 CDD STKc_phototropin_like 481 832 - -
Tsu01g02240 868 PANTHER FLIPPASE KINASE 1-RELATED 1 868 - -
Tsu01g02240 868 MobiDBLite consensus disorder prediction 420 454 - -
Tsu01g02240 868 MobiDBLite consensus disorder prediction 420 455 - -
Tsu01g02240 868 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Tsu01g02240 868 Gene3D Transferase(Phosphotransferase) domain 1 706 828 - -
Tsu01g02240 868 MobiDBLite consensus disorder prediction 75 100 - -
Tsu01g02240 868 Pfam Protein kinase domain 482 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02240 868 Pfam Protein kinase domain 710 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02240 868 MobiDBLite consensus disorder prediction 233 305 - -
Tsu01g02240 868 Gene3D Transferase(Phosphotransferase) domain 1 561 629 - -
Tsu01g02240 868 MobiDBLite consensus disorder prediction 233 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02240 Tsu-Chr1 23647693 23651776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02240 1 868 AGC Kinase Gene Family AT3G52890 53.095 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Tsu01g02240 Pkinase 2.5e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02240 - K08286 gmx:100813470 1310.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04001 07 46081460 46086264 Tsu01g02240 01 23647693 23651776 ECH
Tsu01g02240 01 23647693 23651776 Tsu01g02240 01 23647693 23651776 ECH
Tsu07g03810 07 44368465 44370129 Tsu01g02240 01 23647693 23651776 PCT
Tsu07g04001 07 46081460 46086264 Tsu01g02240 01 23647693 23651776 PCT