Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02232 ATGAAGGTTGTTGCTGCCTATTTGCTTGCCGCTCTTGGAGGCAACGACACTCCCTCTGCCAAAACCATCAAGGACATCCTTGGCTCAGTTGGAGCAGACGCCGAAGATGATAGGATTGAGTTGTTTTTGTCTGAAATTAAGGGCAAAGATTTAGCTGAGGTTATTGCATCTGGTAGGGAAAAGTTGGCATCAGTGCCTTCTGGTGGTGGTGTTGCTGTTTCCGCTGCACCTGCAAGTGGTGGTGGTGCTGCTCCTGCAGCCGCTGAGGCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGAtgatGATATGGGATTCAGTCTTTTTGATTAA 339 0.4808 MKVVAAYLLAALGGNDTPSAKTIKDILGSVGADAEDDRIELFLSEIKGKDLAEVIASGREKLASVPSGGGVAVSAAPASGGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02232 112 Pfam 60s Acidic ribosomal protein 18 111 - -
Tsu01g02232 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tsu01g02232 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Tsu01g02232 112 MobiDBLite consensus disorder prediction 74 112 - -
Tsu01g02232 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Tsu01g02232 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 112 - -
Tsu01g02232 112 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02232 Tsu-Chr1 23433539 23435854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02232 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 72.321 8.05e-34 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02232 K02943 - pvy:116129032 121.709