Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02213 ATGCCGTCGTCGATGATGGCAAAAGACAATGGTATCTTCTTCGATTATGTTGAAGAGATTCGCGCAGGGGAGTTGAGAGACAGTTCCTGCGGCCTTGAAAACTCTGCTATTCCGCTCGTGCCATATAACCAAAGCACAACACAACCAAACGAACCATtcctttttccttcattttcctTCCCTTTACCTTACCACTaccatttctttcttcttattatCTCCACCTCCCTCTTTTCCTTCTCACCCTCCTCTACCCTTCTCATCACACACCAAGGTACAAAGAATTCTCTGATTCCACGCGAATTTTCATTTCCgaacaaaaaagagaaagaaaattcTCTCAGATCCATGGCGGAAGAACAACCATGTCAAGCACCTGAAGGTCACCGTCTCTGCGCAAATAACTGTGGTTTCCTTGGTAGTCCAGCAACCATGAATCTCTGTTCAAAATGTTACGGTGATATTCGTATAAAGGAACAACAAGATGCTTCAACCAAATCAACAATCGAAAACGCTCTTTCGTCATCATCTTCTTCCGCCGTCGCATCGATCGCTTCTCCTTCTCCGTCGCTTTCTACATCTGAGCCGATCGTTGTTTCCGTCGAATCAATTAACCCGACGCCAGTTTTGACAGAGATCGCGACGAGTTCTATAACCGTCGGTTCGGTTGGTTCGGTTCAACCGAACCGGTGCGTGACGTGTAGAAAGCGCGTGGGGTTGACCGGGTTTAAGTGTAGATGTGGGTCTACGTTTTGTGGGTCCCACAGGTATCCAGAGAGACACGGCTGTAGCTTTGATTTTAAGACGGTGGGGAGAGAGGAAATAGCTCGAGCGAATCCTTTGATTAGAGCGGAGAAACTTCAGAGGATTTGA 873 0.4422 MPSSMMAKDNGIFFDYVEEIRAGELRDSSCGLENSAIPLVPYNQSTTQPNEPFLFPSFSFPLPYHYHFFLLIISTSLFSFSPSSTLLITHQGTKNSLIPREFSFPNKKEKENSLRSMAEEQPCQAPEGHRLCANNCGFLGSPATMNLCSKCYGDIRIKEQQDASTKSTIENALSSSSSSAVASIASPSPSLSTSEPIVVSVESINPTPVLTEIATSSITVGSVGSVQPNRCVTCRKRVGLTGFKCRCGSTFCGSHRYPERHGCSFDFKTVGREEIARANPLIRAEKLQRI 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02213 290 Gene3D - 115 183 - -
Tsu01g02213 290 SMART AN1_Zf_4 231 268 IPR000058 GO:0008270
Tsu01g02213 290 PANTHER BNAC06G14100D PROTEIN 117 290 - -
Tsu01g02213 290 Pfam A20-like zinc finger 130 152 IPR002653 GO:0003677|GO:0008270
Tsu01g02213 290 Gene3D - 215 286 IPR035896 -
Tsu01g02213 290 SMART A20_3 129 153 IPR002653 GO:0003677|GO:0008270
Tsu01g02213 290 ProSiteProfiles Zinc finger AN1-type profile. 225 271 IPR000058 GO:0008270
Tsu01g02213 290 ProSiteProfiles Zinc finger A20-type profile. 126 160 IPR002653 GO:0003677|GO:0008270
Tsu01g02213 290 PANTHER AN1-TYPE ZINC FINGER PROTEIN 117 290 - -
Tsu01g02213 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 131 176 - -
Tsu01g02213 290 Pfam AN1-like Zinc finger 233 267 IPR000058 GO:0008270
Tsu01g02213 290 SUPERFAMILY AN1-like Zinc finger 226 285 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02213 Tsu-Chr1 23204017 23212934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02213 117 290 C2H2 Transcription Factor Family AT3G52800 55.429 1.53e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02213 - - lang:109347531 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02213 01 23204017 23212934 Tsu01g02213 01 23204017 23212934 ECH
Tsu07g04008 07 46148652 46149963 Tsu01g02213 01 23204017 23212934 PCT