Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02190 ATGATGACTTTCATGAAGGGAAAATTGAGCCAGAAGCATTATGATGATGTTGGTCCAAGAGTGTTCATATCCAAGAACCTTGAGATAGAAAGAAAGAGAAGGGAGAAACTTGGTTCAAGACTTTTGGTGCTTAGGTCTCTAGTACCAATCATCACAAGTATGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACCAAGAAGTTGCAAAATGAAATTGAGATTCTTACAAAAGAGCTTGATGAAATGGaagaaacaagaaagaaaaaagcagAGCAAAAAACATGTGAATCTTCTGCTGCTAGGGAAAATATCAATATATCTTGGATAGagGAAGAGATCCAGGTAGCAAAAATTGATGGGAATACGTTATGGGCCAAGATGATCATTGAGAATAAGAGAGGAAGGTTCAAGAAATTAGTAGAGGACTTGAATAATTCAAACATTGAAATGATTGATCTCAGTGTTACAACTATAGAAGGAGCATATCTTATTACAGCCACCTTAAAGGGTATGGGTGGTGAACCAATTGAGCTTTATCAAATTCCAACATTATGA 561 0.344 MMTFMKGKLSQKHYDDVGPRVFISKNLEIERKRREKLGSRLLVLRSLVPIITSMNKASIIEDAITYTKKLQNEIEILTKELDEMEETRKKKAEQKTCESSAARENINISWIEEEIQVAKIDGNTLWAKMIIENKRGRFKKLVEDLNNSNIEMIDLSVTTIEGAYLITATLKGMGGEPIELYQIPTL 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02190 186 Gene3D - 24 88 IPR036638 GO:0046983
Tsu01g02190 186 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 21 70 IPR011598 GO:0046983
Tsu01g02190 186 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 17 183 - -
Tsu01g02190 186 Pfam Helix-loop-helix DNA-binding domain 27 71 IPR011598 GO:0046983
Tsu01g02190 186 PANTHER TRANSCRIPTION FACTOR DYT1 17 183 - -
Tsu01g02190 186 SMART finulus 27 76 IPR011598 GO:0046983
Tsu01g02190 186 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 19 85 IPR036638 GO:0046983
Tsu01g02190 186 Coils Coil 60 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02190 Tsu-Chr1 22968964 22970535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02190 22 171 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 44.586 8.51e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g02190 HLH 3.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02190 - - mtr:MTR_4g091910 221.09