Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02187 ATGCCAATCtcatattcatattcatcaCTCTCAATTTCATCATCCATTCTACCAAAGCTAAACCCAAACCTCCGTCCAATCCAATTCCGAACCAAACAACAATATAACCGCCAATTCCCGAACCTAAAAATCCAAAACTCCTCCACCACCAACAACACCACCATACAGTTTCTAAAACCGTATCTAATTTCGCAGCAAAAACCAATCCTCTTCGGTTGGCTCTGTAGTGCTATCTCCGTTTACTCTCTCTCTAACATCCTATCCAAATTCTCCGCCATAACCACCACCACAACAACCGTCCACGTCACACATGGATTCGCTCTCGGCGGTTTAGTTCTTGTTCGATTGATTGCCAAGTATGCACAACATGCGCTTCTTTGGGAAGCTTCTCTTAACGCGGTTTACGATGTTCGCGTTCACGTTTTCGATCGTGTTTTCAATAGGGAACTTGCGTTTTTTGAAGCTAACGACGCCGTTTCCACTGGGGATATTGCTTATCGGATTACTGCTGAAGCTTCTGATCTTGCTGTTACCTTATACGCTCTTCTTAATACCATAGTACCTAGTACTCTGCAATTGTCTGCAATGATAATGCATATGTTGGTTATAAGTCCTTCCCTTTCTTTGATTTCAGCCATGGTTATTCCTTGTATGGTTCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAAAGTCACATACTAGCGTTGCTGCTCTCTCAGCATATCTAAACGAGATCTTGCCCGCAATTCTCTTTGTGAAAGCGAACAACGCAGAGTTGCTTGAGAGTGTCAGGTTTAAGAGACTGGCCCTGATAGACAATTCTGCAAAGTTGAACAAAAAAAGGATGAAAGCAGTCATTCCCCAGGTTATACAGGCTATTTATTTTGGAGTCCTTTCCATTCTTTGCGCAGGTTCGGCAGTGATTTCAAGAGGTTCATTTGATCGCTGTAGCTTGGTTCAATTCGTGTCTTCGTTGCTTTTCTTGATTGAGCCTATTCAGGATGTAGGAAAAGCTTACAATGAATGGCGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGCGATGACCCAGTTCAAAAATAAGGTGGTTGAAAAACCAGATGCTGTTGATTTGGACCATGTTACAGGGGAGTTGAAATTCTGTAGTGTCTCCTTTAAGTATAACGATGGTCTGCCTCTTATCTTAAATGAATTGAATCTCCACGTTCGGCCTGGAGAGACAGTTGCTATCGTCGGTCCTTCTGGGGGAGGGAAAACAACACTTGCAAAACTGTTGCTTCGCCTTTATGATCCTATATCTGGGGCTATACTGATTGATAACCAAAATACCCAAAACATTAGTTTGCAGAGTTTAAGAAGACATGTTGGTGTAGTTTCTCAAGACATAACACTTTTTTCAGGTACGGTAGCTGAAAACATTGGTTATAGGGATATGACAACAAAAATTGACATGGAGAGAGTGAAGCATGTAGCTCAAACTGCTTATGCCGACGAGTTTATCAGCAAACTTCCAGAAGGTTACAAAACCAATATTGGACCAAGGGGATCAACTTTAAGCGGAGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTTTCTATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCTGCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTAATGGAAAATCGTACGGTGCTTGTAATCTCACATCGCTTGGAAACCGTTATGATGGCTAAACGAATATTCCTTTTAGATAATGGAAAGCTAGAAGAGCTGCCTCGATCAACTATGTTGGACGGTCATATGGATTCATTGTTATCATCTGGGCAGATCGTttga 1866 0.4153 MPISYSYSSLSISSSILPKLNPNLRPIQFRTKQQYNRQFPNLKIQNSSTTNNTTIQFLKPYLISQQKPILFGWLCSAISVYSLSNILSKFSAITTTTTTVHVTHGFALGGLVLVRLIAKYAQHALLWEASLNAVYDVRVHVFDRVFNRELAFFEANDAVSTGDIAYRITAEASDLAVTLYALLNTIVPSTLQLSAMIMHMLVISPSLSLISAMVIPCMVLVVAFLGQELRKISKKSHTSVAALSAYLNEILPAILFVKANNAELLESVRFKRLALIDNSAKLNKKRMKAVIPQVIQAIYFGVLSILCAGSAVISRGSFDRCSLVQFVSSLLFLIEPIQDVGKAYNEWRQGEPAIERLFAMTQFKNKVVEKPDAVDLDHVTGELKFCSVSFKYNDGLPLILNELNLHVRPGETVAIVGPSGGGKTTLAKLLLRLYDPISGAILIDNQNTQNISLQSLRRHVGVVSQDITLFSGTVAENIGYRDMTTKIDMERVKHVAQTAYADEFISKLPEGYKTNIGPRGSTLSGGQRQRLAIARAFYQNSSILILDEATSALDSKSELLVRQAVERLMENRTVLVISHRLETVMMAKRIFLLDNGKLEELPRSTMLDGHMDSLLSSGQIV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02187 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 372 601 IPR027417 -
Tsu01g02187 621 SUPERFAMILY ABC transporter transmembrane region 58 362 IPR036640 GO:0005524|GO:0016021
Tsu01g02187 621 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 42 611 - -
Tsu01g02187 621 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 74 349 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02187 621 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 42 611 IPR039421 -
Tsu01g02187 621 SMART AAA_5 409 597 IPR003593 -
Tsu01g02187 621 CDD ABC_6TM_exporters 105 357 - -
Tsu01g02187 621 Gene3D - 373 619 IPR027417 -
Tsu01g02187 621 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524
Tsu01g02187 621 Pfam ABC transporter transmembrane region 75 336 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g02187 621 Pfam ABC transporter 400 551 IPR003439 GO:0005524
Tsu01g02187 621 Gene3D ABC transporter type 1, transmembrane domain 51 362 IPR036640 GO:0005524|GO:0016021
Tsu01g02187 621 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 383 620 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02187 Tsu-Chr1 22859115 22863725 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02187 373 619 Calmodulin-binding Proteins AT2G36910 44.400 4.69e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02187 K02021 - gmx:100788075 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02187 01 22859115 22863725 Tsu01g02187 01 22859115 22863725 ECH