Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02180 ATGCTAGGGAAAAAGATGGTATCATTGAAGAAACTTGCCAAGAAGGTGAAAGCTAGTGGTGGAGCTGACCCTAACACTAACCATGAATGTTTGTTGAAGGGGTATGAAGAAGAATTCTCCACAAACACAACTCCAACCGGTTATTTTGCACTTTATGTAGGGGAAGAGCATCAGAGAAATGTGGTTCCAACAAGCTATCTTTCTCACCCTTTATTCAAGATTTTGCTAGAAAAATCATACAATGAATTTGGGTTTGAGCAGAGGAATGGTCTTGTAGTTCCATGTAGTGTTTCAACATTTCAAGAGGTTGTGAATGCTATTGAATGTAACAATGGCAAGTTTCATTTGGGCaagatttttcatgattttgtttCAAGTGTAGAAAAATAG 390 0.3641 MLGKKMVSLKKLAKKVKASGGADPNTNHECLLKGYEEEFSTNTTPTGYFALYVGEEHQRNVVPTSYLSHPLFKILLEKSYNEFGFEQRNGLVVPCSVSTFQEVVNAIECNNGKFHLGKIFHDFVSSVEK 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02180 129 Pfam Auxin responsive protein 25 106 IPR003676 GO:0009733
Tsu01g02180 129 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 124 IPR003676 GO:0009733
Tsu01g02180 129 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 1 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02180 Tsu-Chr1 22818666 22819055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02180 45 115 Calmodulin-binding Proteins AT5G20810 50.704 2.00e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02180 K14488 - gmx:100776885 183.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02180 01 22818666 22819055 Tsu01g02180 01 22818666 22819055 ECH