Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02176 ATGAGTAGCAATCGGAAGAATAAGCATATTCTCCCGGCTTCTACTATCCGATTTTTTAGAATTATCACGACAACAGTTCTTCAAGATGGAAAGCTCAGGATTCCAAACTCTTTCACTAGGAAACATGGGAGTAATATGACAAACCCAATATTTCTCAAGACTCCAGATGGCAAAAAATGGGAAATATATACTACCAAAAATGGAGATTTTTGGTTTCAAAAGGGTTGGAAAGAATTTACTACACATTATTCACTAGACCATGGACACATGGTATTGTTTGAATATGAAGAAAACTCTCAATATTTTAGGGTGCATATATTTGCCATGAGTGGACTTGAAATTGAATATCCTTTCCATGACAATCAACATGAACAAAACAACCTTGACCAAATTAGTGATGAtgattcaattgaaattttggaTAAGTCACCTTCATGCAAGAAAACAAGACCAAAATCTCTAATTCCATGTTCTCAACCACATAAGAAATTGAGAAGTGACACAAGAGAAGATGTCGGAACAAGCTCGAAATTCCACGACTTGCCTGAAAATCATGTCCAATCTAGTGATGGTAGCGTTAAATGCGAAGAAGTGGAGCAAGTGAGGAAAGAGCGGGAAGATTTATCTTCTAAAATTAATGAAGCGTTAAATAGAGCTAGAAGTTTCAAATCTAAAAATCCTTGTTTCACAATTGTCATGAAATCTTCATATCTTTATGGCTATTCCTTGtATGTCCCAACACAATTtgcaataaaatatttgaagaaagaGGAAAGCAATATTCTAATTAAGCTCTTGGATGGGAGAACTTGGCATGCTAAATATTGTTCTGGAAAAATTAAAGCTGGATGGAAGAATTTTGTAAGAGACAATAAATTGAAAGTGGGTGATGTGTGTGTGTTTGAGTTGACCAAAAGTCAAGCTCTTACTTTGAAAGTACTAATCTTTAGAGTTGATGATGAAGAACCACACTCCTCCCCTCCACATCAAGGTATAATCCAacttgatttttcttttaagttattttatttactaatgTTTAATAAGGAACCACAAAAAACTTCATTGCGGTCAAAAGTCAAATTAGAGACAAATGAAGCTCAAAACTTAGCTGATAATTTCAGTTCAAAAtatccctttttcaagatcaatATTATGCCAAATCAACGGGGGCATTCTAGATTGCATGTACCAAATTCCTTCATTCAAAAGTACTTGGATAGTAAGGAGCAGACTGTGATGTTAAAGTTTGGAAAGAAATTTTGGCCAGTAAATTTACTATGTTACTCACACATGAAATCAGGGCAGTTTTCTAGAGGTTGGAACCAATTTTGGgaagaaaataatttgaaagGTGGTGAAGTATGTGTTTTTGAGCTCATCAAGACTGAAGATGCTGTGCTTCAAGTTCATATTTTCAGAGGCAATTGA 1431 0.3277 MSSNRKNKHILPASTIRFFRIITTTVLQDGKLRIPNSFTRKHGSNMTNPIFLKTPDGKKWEIYTTKNGDFWFQKGWKEFTTHYSLDHGHMVLFEYEENSQYFRVHIFAMSGLEIEYPFHDNQHEQNNLDQISDDDSIEILDKSPSCKKTRPKSLIPCSQPHKKLRSDTREDVGTSSKFHDLPENHVQSSDGSVKCEEVEQVRKEREDLSSKINEALNRARSFKSKNPCFTIVMKSSYLYGYSLYVPTQFAIKYLKKEESNILIKLLDGRTWHAKYCSGKIKAGWKNFVRDNKLKVGDVCVFELTKSQALTLKVLIFRVDDEEPHSSPPHQGIIQLDFSFKLFYLLMFNKEPQKTSLRSKVKLETNEAQNLADNFSSKYPFFKINIMPNQRGHSRLHVPNSFIQKYLDSKEQTVMLKFGKKFWPVNLLCYSHMKSGQFSRGWNQFWEENNLKGGEVCVFELIKTEDAVLQVHIFRGN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02176 476 SUPERFAMILY DNA-binding pseudobarrel domain 222 318 IPR015300 -
Tsu01g02176 476 Pfam B3 DNA binding domain 22 107 IPR003340 GO:0003677
Tsu01g02176 476 Pfam B3 DNA binding domain 229 317 IPR003340 GO:0003677
Tsu01g02176 476 Pfam B3 DNA binding domain 380 475 IPR003340 GO:0003677
Tsu01g02176 476 Gene3D - 209 321 IPR015300 -
Tsu01g02176 476 Gene3D - 360 476 IPR015300 -
Tsu01g02176 476 Gene3D - 12 111 IPR015300 -
Tsu01g02176 476 MobiDBLite consensus disorder prediction 142 196 - -
Tsu01g02176 476 CDD B3_DNA 227 317 IPR003340 GO:0003677
Tsu01g02176 476 SUPERFAMILY DNA-binding pseudobarrel domain 16 117 IPR015300 -
Tsu01g02176 476 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 13 318 - -
Tsu01g02176 476 ProSiteProfiles B3 DNA-binding domain profile. 228 319 IPR003340 GO:0003677
Tsu01g02176 476 SUPERFAMILY DNA-binding pseudobarrel domain 374 474 IPR015300 -
Tsu01g02176 476 CDD B3_DNA 380 474 IPR003340 GO:0003677
Tsu01g02176 476 PANTHER B3 DOMAIN-CONTAINING 357 474 - -
Tsu01g02176 476 PANTHER B3 DOMAIN-CONTAINING 13 318 - -
Tsu01g02176 476 Coils Coil 198 225 - -
Tsu01g02176 476 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 357 474 - -
Tsu01g02176 476 MobiDBLite consensus disorder prediction 162 178 - -
Tsu01g02176 476 ProSiteProfiles B3 DNA-binding domain profile. 380 476 IPR003340 GO:0003677
Tsu01g02176 476 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Tsu01g02176 476 SMART B3_2 18 110 IPR003340 GO:0003677
Tsu01g02176 476 SMART B3_2 380 476 IPR003340 GO:0003677
Tsu01g02176 476 SMART B3_2 229 319 IPR003340 GO:0003677
Tsu01g02176 476 CDD B3_DNA 17 107 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02176 Tsu-Chr1 22777573 22780482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02176 357 476 B3 DNA Binding Superfamily AT3G18990 37.705 7.31e-18 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g02176 B3 5.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02176 - - mtr:MTR_1g035460 517.694