Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02175 ATGTCGTTTGAACACTATGGTCGTGGCAGTGAAGCTAAGGGCATGCACTTCTATCAGACTATTCAACTTCGCCAGTTGCAAGACCAAGAACTAATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCCCTTAGACTTCCAAATGAATCTGTGTGTAAAATGTTTTGGGTGCAATGGGGTGATGATATTTATATTCAGGATTGGAAAAGGTTTGCGCGGTCGCTTAGATGCGGAGatcttttagtttttcaataCAAAGGAGGGTCAGATTTTCATGTTATTATATTAGATGAGAGTAAATTAGAAATTGACTATTCAAGTATGAGGTACAATGATgaccaagaagaagaagagcgTGAAAATATCGAACAACCcctcaagaaaaagaaaatcaactcAAATGATAGTGCTTCTACCGCTGGTACACCTCAAGGGACAGACATTGAcaagagaaaaattaatatgaatGCAACCCAGCAAAAAGTCTCAGAGGCTAATAGAAACAGAGGAGGCAGCAGGGATATGAAAGTTAAGAAATGCACAAAAACTATAGATGCGAATAAGAGAAGCTGCACTGATTCTCATCCCGACGAGAATCCCAATTTCACTATCAAATTATCGCGATCTTATGTGGAAGGTCATAGTTTAAAATTGAGGATACCTTCTTCGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAGGGAATGCAACAATTAGAAGTGTTGATGACGACAGGACATGGAATGTGACATTAAAATTGGATGAATGCAATGGAAATTTTGAAATGAGAACAGGTTGGAAGTCATTTTCACAGGAACATAACTTGCAAGTTGGCGATGTATGTAAATTTGAGATGACTCAAAGAGAACCACTTTCCTTCACAATTACTATTATCCCAGCTACAAAGGAACCATGCCCGGAGCAATTTCAAGAAAACCAACCAGTCCAAGAAGATCTGGATTATGTTGGCAATTATGGAGAAGGAATTTCAAGGGGCTGCCCAAAAACTCATGATTCTCCATGTCCGATTTCACATTATAAATTTGAGGTTTCTGTAACATCATTAGACAAGGTGGCCATACCAAGTGAGTTCTTGAAGAGACAAAATATACTTGGTGGAAATTCAGTTGAGTTGAGAGTAGGGGAAGGAAAATGGTTTGTAGAGGTGAGTTATAATCAACATCTTGATTATGGGTGGTTTACTAAAGGTTGGGAAGAATTTGTGAGAGAATGCAAGGTAAAGAGTGGAGACACTTGTTTATTTGAGATGATTGATGTGCAAAATCATGTATTCAAGGTTTCAATTATCCTAGATGTTTAG 1344 0.3571 MSFEHYGRGSEAKGMHFYQTIQLRQLQDQELMIPRNFVERYWKDVSNPISLRLPNESVCKMFWVQWGDDIYIQDWKRFARSLRCGDLLVFQYKGGSDFHVIILDESKLEIDYSSMRYNDDQEEEERENIEQPLKKKKINSNDSASTAGTPQGTDIDKRKINMNATQQKVSEANRNRGGSRDMKVKKCTKTIDANKRSCTDSHPDENPNFTIKLSRSYVEGHSLKLRIPSSFSKEYMNELLQGNATIRSVDDDRTWNVTLKLDECNGNFEMRTGWKSFSQEHNLQVGDVCKFEMTQREPLSFTITIIPATKEPCPEQFQENQPVQEDLDYVGNYGEGISRGCPKTHDSPCPISHYKFEVSVTSLDKVAIPSEFLKRQNILGGNSVELRVGEGKWFVEVSYNQHLDYGWFTKGWEEFVRECKVKSGDTCLFEMIDVQNHVFKVSIILDV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02175 447 SUPERFAMILY DNA-binding pseudobarrel domain 204 306 IPR015300 -
Tsu01g02175 447 CDD B3_DNA 31 104 IPR003340 GO:0003677
Tsu01g02175 447 ProSiteProfiles B3 DNA-binding domain profile. 351 447 IPR003340 GO:0003677
Tsu01g02175 447 CDD B3_DNA 207 307 IPR003340 GO:0003677
Tsu01g02175 447 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 306 - -
Tsu01g02175 447 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 364 444 - -
Tsu01g02175 447 Gene3D - 188 310 IPR015300 -
Tsu01g02175 447 Gene3D - 349 446 IPR015300 -
Tsu01g02175 447 SUPERFAMILY DNA-binding pseudobarrel domain 359 444 IPR015300 -
Tsu01g02175 447 MobiDBLite consensus disorder prediction 138 173 - -
Tsu01g02175 447 Coils Coil 155 175 - -
Tsu01g02175 447 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Tsu01g02175 447 MobiDBLite consensus disorder prediction 117 184 - -
Tsu01g02175 447 MobiDBLite consensus disorder prediction 117 137 - -
Tsu01g02175 447 SMART B3_2 356 442 IPR003340 GO:0003677
Tsu01g02175 447 SMART B3_2 209 309 IPR003340 GO:0003677
Tsu01g02175 447 SMART B3_2 17 106 IPR003340 GO:0003677
Tsu01g02175 447 PANTHER B3 DOMAIN-CONTAINING 9 306 - -
Tsu01g02175 447 PANTHER B3 DOMAIN-CONTAINING 364 444 - -
Tsu01g02175 447 Pfam B3 DNA binding domain 358 442 IPR003340 GO:0003677
Tsu01g02175 447 Pfam B3 DNA binding domain 210 307 IPR003340 GO:0003677
Tsu01g02175 447 CDD B3_DNA 359 444 IPR003340 GO:0003677
Tsu01g02175 447 Gene3D - 9 107 IPR015300 -
Tsu01g02175 447 ProSiteProfiles B3 DNA-binding domain profile. 210 309 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02175 Tsu-Chr1 22773984 22776851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02175 17 304 B3 DNA Binding Superfamily AT3G18990 24.702 9.91e-19 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g02175 B3 1.7e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02175 - - mtr:MTR_6g061070 617.846