Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02162 ATGGATCTTCCAGAAACATCATCACTATGGTGgtctcaacaacaacaacatcatcaacaacaacaaactaTGATATTACTTGAACCAGTTCAAAACACTTCTTGGTCTCTCCATCATCACCAACCCACATGGTTTAATTCACAAATCCATGAAAACATGACACCCCATTTCAACCAAAATAACAACAACATGGAAGATGAAGAAGTACAAAACAACAGTACTACTACCATGACCACTGAAATAAAATCTGAAGACGAAAAAGAATCAATGTTCGAGAAACCATTAACACCTTCTGACGTAGGTAAACTTAACCGTCTTGTTATACCGAAACAATACGCCGAAAAATACTTTCCACTCGGCGGAGTCAGTGACTCCGCCGAGTGTAAAGGGTTGTTACTAAGTTTCGAAGATGAGTCAGGAAAGTGTTGGAGATTTCGTTACTCTTATTGGAACAGTAGTCAAAGCTATGTTTTGACTAAAGGTTGGAGTAGATATGTTAAAGATAAACGTCTTGATGCTGGTGACGTTGTTTTGTTTGAACGACATCGTTTTGATAGTCAGAGACTTTTTATTAACTGGAGGAGGAGGTTGAGTGGAGATGAACAGTCGGCGTATGTTAGTAGAGGACATGGTGGTAAAAGTAGTAGTAATGGAGGTGGGAATAGTAAAAATGAGGTTGTTAGTGGTGTGGGTGGTGTTGGGTGGTCCAGAGGATTCTATTCTGCGCATGTTCCTTATCCTGCGCATCATCATCAGGTTTTGCCATATCAACATGATCACTGTCTTCATGCAGGTAGAGGGTCCCAAAGTCAGAATCAAAGGACAAAACCAATGGGAAATAGTTCAAGTTCAAGTTCTTCTAGTTCAAGGGTACTTAGGTTATTTGGTGTTAACATGGAATGCCAACCAGAACATGATTCTTCCTCACCCCAATGTTCTTatgatagtaataataatttgccattaACACAAGGTACTTTAGATAATAATAGCCACAATCTCTACCAACCTAATTCAAATCATCACGTGGTACGTCACCAACCATATTACTACTAG 1056 0.375 MDLPETSSLWWSQQQQHHQQQQTMILLEPVQNTSWSLHHHQPTWFNSQIHENMTPHFNQNNNNMEDEEVQNNSTTTMTTEIKSEDEKESMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLGGVSDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRFDSQRLFINWRRRLSGDEQSAYVSRGHGGKSSSNGGGNSKNEVVSGVGGVGWSRGFYSAHVPYPAHHHQVLPYQHDHCLHAGRGSQSQNQRTKPMGNSSSSSSSSSRVLRLFGVNMECQPEHDSSSPQCSYDSNNNLPLTQGTLDNNSHNLYQPNSNHHVVRHQPYYY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02162 351 Gene3D - 79 207 IPR015300 -
Tsu01g02162 351 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 318 IPR044800 GO:0003700
Tsu01g02162 351 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 318 - -
Tsu01g02162 351 ProSiteProfiles B3 DNA-binding domain profile. 91 197 IPR003340 GO:0003677
Tsu01g02162 351 MobiDBLite consensus disorder prediction 264 289 - -
Tsu01g02162 351 Pfam B3 DNA binding domain 91 196 IPR003340 GO:0003677
Tsu01g02162 351 SUPERFAMILY DNA-binding pseudobarrel domain 87 196 IPR015300 -
Tsu01g02162 351 MobiDBLite consensus disorder prediction 208 224 - -
Tsu01g02162 351 MobiDBLite consensus disorder prediction 204 225 - -
Tsu01g02162 351 SMART B3_2 91 197 IPR003340 GO:0003677
Tsu01g02162 351 MobiDBLite consensus disorder prediction 262 289 - -
Tsu01g02162 351 CDD B3_DNA 90 187 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02162 Tsu-Chr1 22594076 22596836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02162 84 302 RAV Transcription Factor Family AT5G06250 52.655 3.63e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g02162 B3 1.2e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02162 - - cam:101511950 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02162 01 22594076 22596836 Tsu01g02162 01 22594076 22596836 ECH
Tsu07g04055 07 46522246 46524261 Tsu01g02162 01 22594076 22596836 PCT