Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02157 ATGGGTCGTGTCAGAACCAAAACCGTGAAGAAATCTTCACGTCAAGTCATTGAACGTTACTATTCAAGAATGACCTTAGATTTCCACACAAACAAGAAAATCCTTGAAGAAGTTGCACTGATTCCATCGAAGAGACTCCGCAACAAAATTGCTGGATTTTCAACCCATCTGATGAAACGTATTCAGAAAGGACCTGTTCGTGGAATTTCATTGAAGTTACAAGAAGAAGAACGTGAACGTCGTATGGATTTTGTTCCTGAAGTTTCTGCTATTAGGACTGATAATATTGAAGTTGATAAGGAAACATTGGATATGATTGCTGCTCTTGGTATGTCGGATCTTCCTGGTGTTGTTCAGGTTGATCCTGTTCCTGTTCAGCAGATTCCGTATGGTCGTGGTGCTGGTGCTGCTGGTGCTGGTGCTGGTGCTGGAAGAAGGTTTTGA 444 0.4212 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIRTDNIEVDKETLDMIAALGMSDLPGVVQVDPVPVQQIPYGRGAGAAGAGAGAGRRF 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02157 147 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 - -
Tsu01g02157 147 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Tsu01g02157 147 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Tsu01g02157 147 PANTHER 40S RIBOSOMAL PROTEIN S17 1 137 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu01g02157 147 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu01g02157 147 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu01g02157 147 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02157 Tsu-Chr1 22568711 22569891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02157 1 147 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 78.231 5.35e-77 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02157 K02962 - gmx:100819067 230.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02157 01 22568711 22569891 Tsu01g02157 01 22568711 22569891 ECH