Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02144 atggaggatctgcAAAGCACTCTTGAGgctcatgaattgaagcatggtgagagaactcatggcaaagaagatgagcaagctctgtttgtaaagttcaggaagtatcaagatgaaaagaagaaatggcagaacaagaaaggttccaagaaagggaaagaaagtgttgaagaaaaGCCTGAATCTTCAGAGAAAGAAGGAGGAGGGCAAAAcacaaagaaagataagagtaccattcagtgttacagttgtaacaagtatggtcattatgcaagtgagtgtaaggctccaaagaagaagaaaagtcagaATACTGAAGCAGAAGCAAATGTGGCAGAAGATGGTtcaacatcagaagatgatgtgagtttcatggtGACAATCACAGATGAAGAGGAATCAGAGGCACACATGACTGAGAATGATAATGGATCAGATCAAAGTCCATTATTGATGATGCCTACCACAAAGGATGAATTTGGTAAGCAACAAGGATGGTATTTGGACACATGTTGTTCAAATCACATGACTAGTAACAAGGAGTGGCTTGTTAACTATGATTCTTCAAAGAAGTCAAAAATTCGATTTGTTGACAGTAGAACAGTAAAATCAGAAGGAAGTGGTGATATGTTAATCAAGGGAAAGGATGGTAATCAAGTATTGATTACTAGTGTGATGTATGTACCGGATGTGCCATCAAATATTCTAAGCATTGAACAGTTGGTTGAGAAAGGTTTCACAGTGAGCTTAGGAAACAATCAGATGGAAGTATACAATGTGGGAAATAAGATGGTATTTTGTGCATCATTATCACAAAGCAGAACTGTCCAAGTTAAATTTGAGAATTCAAATAGTGAAGTCTTAATTGAGGAGgagaatgataaatcaattaagATTTTAAGGACAGGTGGTGCTAGTAAGCACACATCTAAGGAGTCTGGTAGTGAACATCAGAAAGTGCACATCAGTGAAAATGTGATAATGAATGAGGTGCACATCAATGAAGACAAAACAAGAGCCGGATCAACAAAGGCAAGAGAATCAGATGTGGAAGTAGATGCTGAagcatcagaagctgaagtatCAGCAGTTGAGGCTAATGCAGAAGCAAGAGCCAGATCAACAGTAGTTGAGGCTAATGTAGAAGCAAGAGTCAGATCAACAAGAACAAAAGATTGGAATGCTGAAACAAAGGTTGAAGCATCAGAAGTTGAGGCTAATGTAGAAACAAAAGTCGTATCAACAAGGAAAAGTCAAGTTCCAGCCAGGTGGCAAGAATGTGAGCTTGCAGATGACAGTAGAGTCAGTAAAGAAGGTGAATTAATGCAGTGTGCATTATTGGTTGATGAACTAGTGACTAAGTCAAAAGCTATGATAGATGTAGTATTGGTTGATGAACCAGTGACTAAGTCACAAGCTATGACAGATGTAGGCATAGTATCTTGTTTCTTAAGAAATAAATTGCTTAGAACAAGAGGGTTAATGCTACATCAGAAGAAGTATACTGGAGAAATATTGAGAAGACTCAATATGGTTGAAATTGCTAGATGTTTGAGATATCTGTATAAGAGTAGGCCAGATATATGCCTTCTTAAAGGCTTGGTGAGTAGACTCAAGGAGAATACTAGAAAGTCACATATGAATAATGTAGCCAGAAGAATTCTGAGATACATAGCAGATACACTAGAATTTGGAATTTTCTTTCCAAAGTCAGCAAGGAATGCAAAGCCAAAGATAGAGATTGGTTGGTTGTCTGATGCTGATTGGTGTGGAGACAAGGTAGACAGGAGGAGCACAAGTGGCTATGTGTTTAAGTTCCAAAATGCACCAGtttcatggtgttctaagaagcaatcagtgattgctttatctagctgtgaagcagaCACAAGTAACACAACCCCAACAACAACCTCATTCGACTCCGAGAAATCGTCGTCGAAAGGTTTTGGAAGAGTTGGAAATGAAGGTGTTGCTGTAGAGAAAGATTCTGATGATCCTTATCTTGATTTTAGACATTCAATGTTACAAATGATATTGGAGAATGAGATATATTCTAAGGATGATCTTAGAGAGCTTTTGAACTGTTTTCTTCAGCTTAATTCAAAGGAACATCATGGGATTATTATAAGAGCTTTTACTGAGATCTGGAATGGAGTTTTTTCTGTTAAGTCTGGTTTTTCACCTGGGTGCAATTGGTATTTGCTAACTGTTTTAATTGACGTTTCTCTGTAA 2232 0.3141 MEDLQSTLEAHELKHGERTHGKEDEQALFVKFRKYQDEKKKWQNKKGSKKGKESVEEKPESSEKEGGGQNTKKDKSTIQCYSCNKYGHYASECKAPKKKKSQNTEAEANVAEDGSTSEDDVSFMVTITDEEESEAHMTENDNGSDQSPLLMMPTTKDEFGKQQGWYLDTCCSNHMTSNKEWLVNYDSSKKSKIRFVDSRTVKSEGSGDMLIKGKDGNQVLITSVMYVPDVPSNILSIEQLVEKGFTVSLGNNQMEVYNVGNKMVFCASLSQSRTVQVKFENSNSEVLIEEENDKSIKILRTGGASKHTSKESGSEHQKVHISENVIMNEVHINEDKTRAGSTKARESDVEVDAEASEAEVSAVEANAEARARSTVVEANVEARVRSTRTKDWNAETKVEASEVEANVETKVVSTRKSQVPARWQECELADDSRVSKEGELMQCALLVDELVTKSKAMIDVVLVDEPVTKSQAMTDVGIVSCFLRNKLLRTRGLMLHQKKYTGEILRRLNMVEIARCLRYLYKSRPDICLLKGLVSRLKENTRKSHMNNVARRILRYIADTLEFGIFFPKSARNAKPKIEIGWLSDADWCGDKVDRRSTSGYVFKFQNAPVSWCSKKQSVIALSSCEADTSNTTPTTTSFDSEKSSSKGFGRVGNEGVAVEKDSDDPYLDFRHSMLQMILENEIYSKDDLRELLNCFLQLNSKEHHGIIIRAFTEIWNGVFSVKSGFSPGCNWYLLTVLIDVSL 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02144 743 MobiDBLite consensus disorder prediction 37 71 - -
Tsu01g02144 743 Pfam Zinc knuckle 79 94 IPR001878 GO:0003676|GO:0008270
Tsu01g02144 743 Pfam Transcriptional repressor, ovate 663 719 IPR006458 -
Tsu01g02144 743 CDD RNase_HI_RT_Ty1 584 627 - -
Tsu01g02144 743 PANTHER TRANSCRIPTION REPRESSOR OFP6 623 724 - -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 1 25 - -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 337 362 - -
Tsu01g02144 743 Gene3D - 68 117 - -
Tsu01g02144 743 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 657 717 IPR006458 -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 94 119 - -
Tsu01g02144 743 SUPERFAMILY Retrovirus zinc finger-like domains 62 102 IPR036875 GO:0003676|GO:0008270
Tsu01g02144 743 ProSiteProfiles Zinc finger CCHC-type profile. 80 94 IPR001878 GO:0003676|GO:0008270
Tsu01g02144 743 ProSiteProfiles OVATE domain profile. 659 718 IPR006458 -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 628 648 - -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 628 653 - -
Tsu01g02144 743 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 623 724 IPR038933 GO:0045892
Tsu01g02144 743 MobiDBLite consensus disorder prediction 337 351 - -
Tsu01g02144 743 MobiDBLite consensus disorder prediction 37 75 - -
Tsu01g02144 743 SMART c2hcfinal6 79 95 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02144 Tsu-Chr1 22457755 22464530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02144 506 628 Receptor kinase-like Gene Family AT4G23160 36.585 3.47e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tsu01g02144 Ovate 1.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02144 - - lang:109327756 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02144 01 22457755 22464530 Tsu01g02144 01 22457755 22464530 ECH