Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02139 ATGTCAATGTCCGGTGGCGCTGGTGGCTCGTCGAGGGAGGCTGCCGGAGCACCAAGTCGGCCGCCGTTGAAACGTCATCTGGCTTTTGTCTCGACGAGACCACCGTTTGCACCTACGGATGAGTATCATAGTTTCGCCGCCGTTGATTCTAGGAAAGTTCCCGATCACGTTACTGAAGCCGTCATTGTTAGATCTCCGCTCATAAAGCGGAAGAATGGAATGAATGAAAGCCAAGGAGAATCACAAAAGTGGAATAACAGTCCTGGATACACTAATGTAACGAATAGCCCCTTTAAAACTCCTTTGTCTGCAAAAGAAGGAAGGACACATAAGTCAAGGGTTGCCAAAGAAGGCAGATCATGTCCTCAAACACCCATCTCAAATGCCGGTTCCCCTTCTCCGCTTACTCCTGCTGGCAGCTGTCGATATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGATCAAGCATGCAGAGGATGGCATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATACGACATAACTAATGTTTTGGAAGGCATTGGTCTCATCGAAAAGAATATCAAGAACAGAATACTTTGGAAAGGAATTGAATCTTCTACTCCTGGCAATGTGGATGGtgatatcaatatgcttaaGTCAGAAGTTGAAAAACTTTCTTTGGAAGAGCAGAGATTAGATGATAAAATAAGGGAAATGCAAGAAAAGCTAAGAAGTTTGAGTGAAGACGAAAATAACCAGAAGTTCCTTTATGTGACCGAAGAAGATATTAAGGGCCTACCTTGCTTCCAGAATGAAACTTTGATAGCAATTAAAGCTCCGCATGGAACCACCTTGGAAGTCCCCGATCCCGAGGAAGCCGTTGACTATCTACAGCGGAGATATAGAATCATTCTTAGGAGCACAATGGGTCCCATCGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGCTGCTGAGCCCCCGACGAGCTTAGCTATTGCTTCAAGTTCAGGGTCAACTGAGCAACAAGTGACAGAAATGGTTCCTGCTGAATGCAGTGGAAACGGACTTGATCCTCAAGCTCTCCTCTCTTCTCAGACATACTCTGATTTAAATGTTTCACAAGAGCTTGCTGGGGGCATGATGAAGATAGTCCCTTCAGATGCTGATAATGATGCTGATTATTGGCTTCTATCGGATGCTGAAGTTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAGTGCTGTGGACATGCTTCATCCTGACTTCGAAATGCTTGCGAGGCCACAAACTCCATCGCCTGTACTTGCAGAAGCACCATCAACTGTAGCTAACCCTAATCAGAggtga 1392 0.4375 MSMSGGAGGSSREAAGAPSRPPLKRHLAFVSTRPPFAPTDEYHSFAAVDSRKVPDHVTEAVIVRSPLIKRKNGMNESQGESQKWNNSPGYTNVTNSPFKTPLSAKEGRTHKSRVAKEGRSCPQTPISNAGSPSPLTPAGSCRYDSSLGLLTKKFINLIKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRILWKGIESSTPGNVDGDINMLKSEVEKLSLEEQRLDDKIREMQEKLRSLSEDENNQKFLYVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYLQRRYRIILRSTMGPIDVYLISQFEEKFEEINAAEPPTSLAIASSSGSTEQQVTEMVPAECSGNGLDPQALLSSQTYSDLNVSQELAGGMMKIVPSDADNDADYWLLSDAEVSITDMWRTDSSVDWSAVDMLHPDFEMLARPQTPSPVLAEAPSTVANPNQR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02139 463 PANTHER TRANSCRIPTION FACTOR E2FB 21 449 - -
Tsu01g02139 463 SUPERFAMILY "Winged helix" DNA-binding domain 142 205 IPR036390 -
Tsu01g02139 463 PANTHER TRANSCRIPTION FACTOR E2F 21 449 IPR015633 GO:0000978|GO:0006357
Tsu01g02139 463 Coils Coil 158 178 - -
Tsu01g02139 463 Pfam E2F/DP family winged-helix DNA-binding domain 144 207 IPR003316 GO:0005667|GO:0006355
Tsu01g02139 463 SUPERFAMILY E2F-DP heterodimerization region 220 324 IPR037241 -
Tsu01g02139 463 MobiDBLite consensus disorder prediction 71 102 - -
Tsu01g02139 463 SMART E2F_TDP_2 142 207 IPR003316 GO:0005667|GO:0006355
Tsu01g02139 463 MobiDBLite consensus disorder prediction 71 137 - -
Tsu01g02139 463 Gene3D - 214 324 - -
Tsu01g02139 463 CDD E2F_DD 223 324 IPR032198 GO:0046983
Tsu01g02139 463 Gene3D - 136 209 IPR036388 -
Tsu01g02139 463 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g02139 463 Coils Coil 220 257 - -
Tsu01g02139 463 Pfam E2F transcription factor CC-MB domain 223 323 IPR032198 GO:0046983
Tsu01g02139 463 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02139 Tsu-Chr1 22366762 22371810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02139 18 457 E2F-DP Transcription Factor Family AT2G36010 56.652 1.08e-168 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Tsu01g02139 E2F_CC-MB 8.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02139 K06620 - gmx:100811762 708.368