Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02122 ATGGCGGAAGCGCAACCCCATAACTGTTGTAGAAGATGTTGCTGTTGCCTCTTTGGCGTAATTTGGAAGCTCATCGTAGCAATAATCGTCCTCATAGTTCTCGTAATCCTGATTTTCTACTTCATTGTTCAACCCCGCTCCTTCAAATTTAGTGTCAAAGAAGCCAAACTAACCGAATTCAACTACAACAACAACACCGTCCGTTACAACCTTGTGCTCAATTTCACGGCCCATAACCCAAACAAAAAACTCGGCATCATCTACGATAAAGTGGAGGGACATGTCTCCTATGAAGGAACTAGGTTCGCTTCAACGGATGTTATAACACATTTGAATTCCGTCCGTCAAGacactaaaaaaacaaatagtatGAGTGGTGTTTTCTCTGGACAAAGTTTTGTGGTTTTTGATTCTGATCAAATTTCTGACTTTGAACGTGATAAGAAATATGGAGTTTTTCATATTGATTTGAAGTTGTACTTTAGGATCAGGGTTAAGCTTGGTGATGTTACCGGTGATGATGATACTAAGGGTAACATTAAATGTGGTCTTGATGTTCCTTTTGGTTCCAATAATGGGACTAAGGTGTCGGGCATTCATGATATGCTTCCGAGCATTCATACTCTAAATATCCTCGACGATTTTAGGTTTTCCTTAGAATTTCTTCGTGTTGTTGGACTCGACCTGCGCGTCCATAGGGCCTTCCGGGCATTTCCATGTATTATGGCCGACGAAGGAGTTCAACGGAAGATCCccgtggaaaataatattaactgGGTTGCCGACGATCCAAGGACGACGCCCAGCAAATTTGAATTCGAGGAGACCTTTCCCGAGGACTTGTGGACCGATATAGAGATTCCCGGTCATGCTGACTGGGAGGTGCGGATTCCCGGGGCTAAACAACGAATTTGTACCACATTCAAAAACGGCGGATTCCCCATGTACCAGATTGCTTTCGAGCATATGGGTCTTCGCCTGCCTTTCACTGATCTAGAAATGGCGATCTTCAACCACTTAGAAGTATGCCCGTCTCAACTGCACCCCAACTCCTTGGCCTTTATTCGTGCCTTTGAGATTGTGGCTGCTTATCTACAAATGGCGCCCACCGTCCCCCTTTTCTTCCATGTCTTTGGCATACAGCGCTCTCGTCCCAGGGGGAACGTGACCGATAAGTGCGGCTGGGTCTCCTTGAAGCAGCACAAGAAATATTTCGAGATCTTCGAGGAGTCTCTTCGGGGTTTCAAGGACAAATGGTATGTTGTCCGCCCCATTACTTCTGCTGGCTGGAAGACAATACTTGTTAGGGGGCCCAAAGTGGACGACGAAGGGAGGGTCCAACATAGGGATGACGGGGAGCCGATAGAAGTGGACTGGAGCTTTATCAAAGGAGGAGCTCGCAGATCTGAAAGCTCTGGATGA 1422 0.4515 MAEAQPHNCCRRCCCCLFGVIWKLIVAIIVLIVLVILIFYFIVQPRSFKFSVKEAKLTEFNYNNNTVRYNLVLNFTAHNPNKKLGIIYDKVEGHVSYEGTRFASTDVITHLNSVRQDTKKTNSMSGVFSGQSFVVFDSDQISDFERDKKYGVFHIDLKLYFRIRVKLGDVTGDDDTKGNIKCGLDVPFGSNNGTKVSGIHDMLPSIHTLNILDDFRFSLEFLRVVGLDLRVHRAFRAFPCIMADEGVQRKIPVENNINWVADDPRTTPSKFEFEETFPEDLWTDIEIPGHADWEVRIPGAKQRICTTFKNGGFPMYQIAFEHMGLRLPFTDLEMAIFNHLEVCPSQLHPNSLAFIRAFEIVAAYLQMAPTVPLFFHVFGIQRSRPRGNVTDKCGWVSLKQHKKYFEIFEESLRGFKDKWYVVRPITSAGWKTILVRGPKVDDEGRVQHRDDGEPIEVDWSFIKGGARRSESSG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02122 473 Pfam Late embryogenesis abundant protein 75 168 IPR004864 -
Tsu01g02122 473 Pfam Putative gypsy type transposon 320 380 - -
Tsu01g02122 473 PANTHER PROTEIN, PUTATIVE-RELATED 8 192 - -
Tsu01g02122 473 PANTHER OS05G0367900 PROTEIN 8 192 IPR044839 GO:0098542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02122 Tsu-Chr1 22117275 22120080 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02122 42 194 SNARE and Associated Proteins AT1G32270 34.177 1.54e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02122 - - gmx:100788062 204.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04089 07 46732000 46732653 Tsu01g02122 01 22117275 22120080 PCT