Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02116 ATGGGAATCCCTCAAGCCATGGTTGCTCTTAAAGAAAGAGCAGCGTTCGTAAAAGATTCGTTGCATAGAAGCCAAACCATTACCGATAACATGGTTTCGATTCTTGGTTCCTTCGATCACCGTCTCTCCGCCCTCGAAACCGCAATGCGTCCCACTCAGATAAAAACGCATTCGATTCGAAGTGCACATGATAATATTGATAAGACTTTAAAAGCTGCGGAGGTGATTTTGACGCAATTTGATCAGACACGGAAGGCGGAGGCTAAAATACTGCGAGGGCCACATGAGGATCTAGAAAGCTATTTGGAAGCAGTTGACCAGCTTAGAAATAATGTTCGTTTCTTCAGCAGCAAAAAGAGTTTCAAAAGCAGTGAAGGTATCGTCAACCATGCAAACAACTTGCTTTCTAAAGCTATCTTAAAGCTTGAAGATGAATTTAAACATCTCTTGACAAATTACAGCAAGCCTGTGGAACCTGATCGCCTATTTGACTGCTTACCGAACTCTCTAAGGCCATCAGCTGCTGGTGGCGGCGGTAAAAACCATTCAGAAAAACAAAGCGGAGATACTGTCACTTTCACTCTCCCAACTCTTATTCCCCCCAGAGTTTTACCATTGCTTCATGAATTAGCAATACAAATGGTTCAAGCTGGACATCAACAGCAGCTCTTTCGAGTCTATACGGACACCCGTTCTGCAGTCCTGGAACAGAGTCTAAGGAAGTTAGGTGTAGAGAGGCTGAGTAAGGATGATGTTCAAAAAATGCAATGGGAGGTTTTGGAGGCTAAGATTGGAAACTGGATTCATTACATGAGGATTTCTGTCAAATTGTTGATTGTCggggaaaaaaaaatctgtgaTCAAATCTTTGAAGGTGTTGATTCTGTGAAAACTCAATGCTTTGCTGAAGTCACTGGTAGCAGTGTAGCTATGCTTCTTAGTTTTGGAGAGGCTATTGCCAGAAGCAAGAGGTCACCTGAAAAATTATTTGTTCTTCTCGACATGTATGAGATAATGAGAGAACTTCAACCAGAGATTGAGTCACTGTTTGATAGTAAAGTTTGCACTGAAATGCGGGAAGCTGCAATCAGTTTGACAAAGCGACTTGCTCAGACAGCGCAAGAAACCTTTGGTGACTTTGAGGAAGCAGTTGAAAAGGATGCTACTAAAACTGCTGTGCAAGATGGAACTGTCCACCCTCTAACCAGCTATGTCATCAATTATGTGAAATTTCTCTATGATTACCAAGCAACTCTAAAACAACTTTTTCAAGAGTTTGATCCTGGTGACCCAGAATCTCAGTTAGCATCTGTTACAACAAGGATTATGCAGGCTCTCCAGAATAACCTTGATGGAAAGTCTAAACTATATAAAGACCCAGGACTAACCCAGTTATTTCTTATGAACAATATCCATTACATAGTGAGATCTGTGAGAAGGTCAGAGGCAAAGGACATGTTGGGGGATGATTGGGTACAAATACATAGAAGAATTGTGCAACAGCATGCCAACCAGTATAAAAGGATCTCTTGGGCAAAgATCTTGCAGTGCCTCACTGTCCAAGGAACTAATTCATCTGGTGGAGACAGCGGTGGACTTTCAAGAACAGCGGTTAAAGATAGGTTCAAGACATTTAACACTCAATTTGACGAGCTCCATCAGAGACAATCTCAGTGGACTGTTCCAGATAGTGAGTTGCGCGAATCACTTAGATTGGCTGTTGCTGAAGTTTTGTTGCCTGCCTATAGATCCTTCCTTAAACGTTTTGGGCCCATGATTGAGAATGGCAAAAATCCTACAAAGTATATCAAATACTCTCCTGAGAATCTTGAACAAATGCTCGGTGAATTTTTCGAAAGCAAGGCATGGAGCGAACAGAAGCGGTGA 1887 0.416 MGIPQAMVALKERAAFVKDSLHRSQTITDNMVSILGSFDHRLSALETAMRPTQIKTHSIRSAHDNIDKTLKAAEVILTQFDQTRKAEAKILRGPHEDLESYLEAVDQLRNNVRFFSSKKSFKSSEGIVNHANNLLSKAILKLEDEFKHLLTNYSKPVEPDRLFDCLPNSLRPSAAGGGGKNHSEKQSGDTVTFTLPTLIPPRVLPLLHELAIQMVQAGHQQQLFRVYTDTRSAVLEQSLRKLGVERLSKDDVQKMQWEVLEAKIGNWIHYMRISVKLLIVGEKKICDQIFEGVDSVKTQCFAEVTGSSVAMLLSFGEAIARSKRSPEKLFVLLDMYEIMRELQPEIESLFDSKVCTEMREAAISLTKRLAQTAQETFGDFEEAVEKDATKTAVQDGTVHPLTSYVINYVKFLYDYQATLKQLFQEFDPGDPESQLASVTTRIMQALQNNLDGKSKLYKDPGLTQLFLMNNIHYIVRSVRRSEAKDMLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQGTNSSGGDSGGLSRTAVKDRFKTFNTQFDELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFLKRFGPMIENGKNPTKYIKYSPENLEQMLGEFFESKAWSEQKR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02116 628 Gene3D Exocyst complex component Exo70 74 628 - -
Tsu01g02116 628 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 36 624 - -
Tsu01g02116 628 Coils Coil 98 118 - -
Tsu01g02116 628 PANTHER EXOCYST COMPLEX PROTEIN EXO70 36 624 IPR004140 GO:0000145|GO:0006887
Tsu01g02116 628 Pfam Exo70 exocyst complex subunit 266 615 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tsu01g02116 628 SUPERFAMILY Cullin repeat-like 76 619 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02116 Tsu-Chr1 22025337 22031839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02116 1 628 EXO70 exocyst subunit family AT5G52340 78.605 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02116 K07195 - gmx:100779774 1081.63