Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02109 ATGGATGAAATTGAAGTTCCACAATATTTCATATGTCCAATTTCTCTTCAAATAATGAAAGATCCTGTTACTGCTATAACAGGTATAACATATGATAGAGAAAGCATTGAACATTGGTTATTCAGAAACAAAAACACAACATGTCCTGTTACAAAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCATACACTTCGTCGTTTGATTCAATCTTGGTGTACACAAAATGCTTCACTTGGTATCGATAGAATTCCAACACCAAAACCACCACTTAACAAAACCCATGTTCAAAAACTTCTTAAAGAAATGAAAGATTCAAAGTTTCAGCTCAAGAGTTTAATGCAGTTGGAATTACTTGCTGCTGAGAATGACAGAAACAGAAAGTGTTTGTTGGATAACGGTGTTCCGAAATCCATGATTTTGTTCTTAGTTGATTGTTATAAAAAAGGTGAAATTCTTGAAGGTATTGAAGAAGCTCTTAGTTTTTTACAATTTGTGAAGGTTCCAAATGAGGAAGTGAAGAATCTTTTATctgaaaataatcaaattttggATTCTTTAACATGGATTTTATCTTCAGAAATGAAAAACTCTGTTGCAGTTAAATCTCATGCGGTTATAGTTCTCAAAAAATTCATCAACAAATGTGATTCCATTGTTTTAGAGAGACTAAAACCCGAGTTTTTCGAAAAGATTGTGAAAGTCTTAAAATATGGTGTTATAACACAACAAGGTTTATGTTCTGCTTTACATGTTTTACTATGTTGTTGTCCTTTGGGAAGAAACAGGTTAATGATGGTTGAAGCTGGCGTTGTTCGCGAATTAATAGAGATCGAATTAACCGCGGTACACGAAAAGAGAATCACAGAACTAACATTTGgaattttgtttcatttatgTTCTTGTGCTAATGGTAGATTTCAGTTTTTGAGTCATGAAGGTTCAATTGCAGTGTTAACTGAAAGAATCTTGAAGGTTTCAATGACAGTGGATGATAGAGGTGTTTTTATACTTTCATTGATATCTAAATTTTCTGCTACAAAGAAAGTTTTGGATGAGATGTTAAAAGTTGGAACAGTTACTaagctttttgttttgttacaaGCTGATCATCCTAAGTATTTGAAAGATAAagttatgcaaatatttaagGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTCAAAATTCTTTCTATGCTAGCTAG 1221 0.3096 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEHWLFRNKNTTCPVTKQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLNKTHVQKLLKEMKDSKFQLKSLMQLELLAAENDRNRKCLLDNGVPKSMILFLVDCYKKGEILEGIEEALSFLQFVKVPNEEVKNLLSENNQILDSLTWILSSEMKNSVAVKSHAVIVLKKFINKCDSIVLERLKPEFFEKIVKVLKYGVITQQGLCSALHVLLCCCPLGRNRLMMVEAGVVRELIEIELTAVHEKRITELTFGILFHLCSCANGRFQFLSHEGSIAVLTERILKVSMTVDDRGVFILSLISKFSATKKVLDEMLKVGTVTKLFVLLQADHPKYLKDKVMQIFKAHSEVWKNSPCFPQNSFYAS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02109 406 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Tsu01g02109 406 Gene3D - 96 392 IPR011989 -
Tsu01g02109 406 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Tsu01g02109 406 PANTHER WDSAM1 PROTEIN 3 403 IPR045185 GO:0061630
Tsu01g02109 406 SUPERFAMILY RING/U-box 3 83 - -
Tsu01g02109 406 SUPERFAMILY ARM repeat 99 379 IPR016024 -
Tsu01g02109 406 CDD RING-Ubox_PUB 10 53 IPR045210 -
Tsu01g02109 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 403 - -
Tsu01g02109 406 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Tsu01g02109 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02109 Tsu-Chr1 21928370 21929824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02109 2 398 U-box Gene Family AT3G11840 41.686 4.69e-115 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02109 - - gmx:100798446 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02109 01 21928370 21929824 Tsu01g02109 01 21928370 21929824 ECH