Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02106 ATGGcaacatattttcataataattcAGAAATTCAAGGTGGTTCTGCTGATGGCCTACAAACACTCATATTCATGAACCCATCAGGTTACATCAATTACTCCGACACGCCACAACCGCCGCCACACGCCGGAAACCTCGTATTTCTAAATTCAGCCGCAACACTCGCCAGCAACGGCAACACTTCcctccaacaacaacaacagaatCTATCTCACGCGCCACCACAGTTTGTAGGGGTCCCACTCTCGGCGGAACAATCAGTACAGGCCCATCACGACATTTCTGCCTTGCATGGGTTCCCACCGCGCATGCAGTATAACTTGTGGAACGCTGCTGACCCAAATTCTGCGGCGCGTGAGGCTACACGCGCTACTCAGGGGCTGTCTTTAAGCTTACATGCACAAGGGTCAGGCGAGGATGCTCGGGTTACGGCTGGTGGGTCGTGTTCCTCTGCTTCAAACAACGGTGTTTCGGGGATTCAGAGTGTGTTATTGAGTTCTAAGTATTTGAAGGCTACACAAGAATTACTTGATGAGGTTGTTAATGTCAATGGTGGGATTAAGGTTGAAAGTGTTAAGAAaagttttgagaaaaataagGTTGTTGGAGAATCTTCAACTGCTGTTAGCGGTGATGGTGGTTCTGTCGGTGGTGATGGAAGTGGAAAACGTAGCTCTGAATTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAGGCAAAGTTAATTAACATGCTTGATGAGGTGGAACAAAGATACAGACAATATCACAACCAGATGCAAATGGTAATATCCTCATTTGAGCAAGTTGCAGGCATTGGCTCAGCAAGAACTTACACTGCACTTGCATTACAAACAATTTCCAAGCAATTTAGGTGTTTAAAAGATGCTATTACTGGCCAAATTAGAGCTGCAaataaaagcttaggagaagatGATAGTTTTGGTGGCAAAATTGAAGGGTCTAGACTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATGCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGgtttcaaattggttcaTAAATGCTCGAGTTCGACTTTggaaaccaatggtggaagaaatGTACATGGAAGAGATGAAGGAGCAAGAAATGAATGGTTCTGAGGATAACAAATCAAGCAAGAATACTGATGAAGACCCTTCAATGAAATCAACAGCTCCACAACAAGTTCCAACCTCAGAAACAGAATCGAAAAGTTTCAATTCGAAACAAGACATTCCTATAGTTTCAGTTTCAGCACAATCAACTTCACCAATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACAGAACTTGATGGAATAACACAAGCAAGTCCAAAGAGAACAAGGAACCATGAAATTCTTCAATCACCAAATAATGTGAAATCCAATGagacaaataataataataatgaacaaATTTCAGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAATCAAACTAATTTCATCGCCGGTTTCGGACAATACCCGATGGAGGAAATTGGTAGATTTGATGCAGAACAATTCACACCAAGGTTTTCAGGTAATAATAATGGTGTTTCGCTCACACTTGGTTTACCTCATTGTGAGACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTAGGAAGAAGATTGGACATTAGTGAACAAAGTGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATGAACATGCAGAATCCAAAGAGATTTGCTGCACAATTATTGCCAGATTTTGTGGCCTAA 1968 0.3867 MATYFHNNSEIQGGSADGLQTLIFMNPSGYINYSDTPQPPPHAGNLVFLNSAATLASNGNTSLQQQQQNLSHAPPQFVGVPLSAEQSVQAHHDISALHGFPPRMQYNLWNAADPNSAAREATRATQGLSLSLHAQGSGEDARVTAGGSCSSASNNGVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVESVKKSFEKNKVVGESSTAVSGDGGSVGGDGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMMHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEMNGSEDNKSSKNTDEDPSMKSTAPQQVPTSETESKSFNSKQDIPIVSVSAQSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNNVKSNETNNNNNEQISEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFTPRFSGNNNGVSLTLGLPHCETLSGTHQSFMPNQNIQLGRRLDISEQSEFGDSSAAFESMNMQNPKRFAAQLLPDFVA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02106 655 MobiDBLite consensus disorder prediction 439 463 - -
Tsu01g02106 655 Coils Coil 233 260 - -
Tsu01g02106 655 Pfam Associated with HOX 163 300 IPR006563 -
Tsu01g02106 655 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Tsu01g02106 655 MobiDBLite consensus disorder prediction 497 525 - -
Tsu01g02106 655 CDD homeodomain 349 409 IPR001356 GO:0003677
Tsu01g02106 655 MobiDBLite consensus disorder prediction 420 438 - -
Tsu01g02106 655 SMART HOX_1 349 413 IPR001356 GO:0003677
Tsu01g02106 655 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Tsu01g02106 655 MobiDBLite consensus disorder prediction 204 233 - -
Tsu01g02106 655 MobiDBLite consensus disorder prediction 420 463 - -
Tsu01g02106 655 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 614 - -
Tsu01g02106 655 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 8 614 - -
Tsu01g02106 655 Gene3D - 352 431 - -
Tsu01g02106 655 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Tsu01g02106 655 SMART prehox3 158 301 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02106 Tsu-Chr1 21669228 21672441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02106 1 655 Homeobox Transcription Factor Family AT2G35940 50.606 0.0 552
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tsu01g02106 POX 1.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02106 - - gmx:100810851 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04103 07 46864286 46871294 Tsu01g02106 01 21669228 21672441 PCT