Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02098 ATGGATCAAGAGATTGAAGTTTCACCATTTTTTCTATGTCCCATTTCATTACAACTCATGAAGGATCCAGTTACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATTGAAAAATGGCTCTTTTCATCACAAAACCAAACATGTCCTGTCACTAAACAACAACTCACACATGATGATAATCATCTCATTATTCTCACACCAAATCACACTCTTCGCAGACTCATTCAAGCATGGTGCACCATTAACACTTCTCATGGTGTTGAAAGAATTCCAACTCCAAAACAACCAACAACAAAGACCCTTATTGAGAAACATCTCAAAGATGCTTCTGATTCTTCAGATTCTCCTCATTTGCTTATTCAATCACTCAAAAACCTCAAAACAGTCGTGTCCGAAAGCGAGACAAATCGAAGGTGTTTAGAATCGGCTGGCGCTGTGGAGTTCTTAGCATCAATAGtaacaaaaaacaatacaagttcttcatcttcatgtTCAACAAcagaatttgaaattgaatctACTAttcttgatgatgatgatgctgaaGGTTTTGCTTTTGACTTCAGAGTTGATGCAGAAGATGAAGCTATAAATATTCTTTACAATCTTCATTTAACAGAGCAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGATTCTTTATTGAGATTAATGCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGTCAAAAGTTGCTGATCCATCAAAACTAGCAAATCTAAAGACCGAGTTTTTCATCGAATTAGTTCAGCTTCTCAAAGATCAGATATCAATAAAGGCATCAAAAGCAACACTACAAACACTAATTCAACTCGTCGAACTCGGAAGAAATAGAGTAAAAGCAATTGAATCAGGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTACTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATATGAGCTATTAAGCCATGGATGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGGGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTATTGTTGCTAAGCTTTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGAAAAAGCAAGAGAGATACTTAAATTGCATGCAAAATCTTGGAAGAATTCTCATTGCATATCTTCTAATTTACTTGCTTCATACCCAACAAGTGGATGA 1329 0.3348 MDQEIEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDNHLIILTPNHTLRRLIQAWCTINTSHGVERIPTPKQPTTKTLIEKHLKDASDSSDSPHLLIQSLKNLKTVVSESETNRRCLESAGAVEFLASIVTKNNTSSSSSCSTTEFEIESTILDDDDAEGFAFDFRVDAEDEAINILYNLHLTEQGLKTLLNFKNGEFLDSLLRLMQKGNYDSRTYSVFLLKSMSKVADPSKLANLKTEFFIELVQLLKDQISIKASKATLQTLIQLVELGRNRVKAIESGCVNVLIELLLDCKERKPCEMILVLLEMLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMLRIGIVAKLCLVLEVDSGNKAKEKAREILKLHAKSWKNSHCISSNLLASYPTSG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02098 442 SUPERFAMILY ARM repeat 112 423 IPR016024 -
Tsu01g02098 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 439 - -
Tsu01g02098 442 SUPERFAMILY RING/U-box 5 86 - -
Tsu01g02098 442 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Tsu01g02098 442 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tsu01g02098 442 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Tsu01g02098 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Tsu01g02098 442 PANTHER WDSAM1 PROTEIN 3 439 IPR045185 GO:0061630
Tsu01g02098 442 Gene3D - 93 431 IPR011989 -
Tsu01g02098 442 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02098 Tsu-Chr1 21599828 21601461 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02098 1 439 U-box Gene Family AT3G52450 52.703 6.72e-156 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02098 - - gmx:100809123 561.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02098 01 21599828 21601461 Tsu01g02098 01 21599828 21601461 ECH
Tsu07g04105 07 46885800 46887532 Tsu01g02098 01 21599828 21601461 PCT