Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02096 ATGGATCAAGAGATTGAAGTTTCACCATTTTTCCTATGCCCCATTTCATTACAACTTATGAAGGATCCAGTGACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATCGAAAAATGGCTCTTTTCATCACAAAACCAAACATGTCCTGTCACTAAACAACAACTCACACATGATGATAATCATCTCATTATTCTCACACCAAATCATACTCTTCGCAGACTCATTCAAGCATGGTGCACCATTAATACTTCTCATGGTGTTGAAAGAATTCCAACTCCAAAACAACCAACAACAAAGACCCTTATTGAGAAACATCTCAAAGATGCTTCTGATTCTTCAGATTCTCCTCATTTGCTTATTCAATCACTTAAAAACCTCAAAACAATCGCGTCCGAAAGCGAGACAAATCGAAGGTGTATTGAATCGGCCGGCGCTGTCGAATTCTTAGCATcaatagtaacaaaaaataatacaagttcttcatcttcatgtTCAACAACAGAATTTGAAATTGAAGCTACCATTCTTGACGATGATGATGTTGAAGGTTTTGCTTTTGACTTTAGAGTAGATGCAGAAGATGAAGCTATCAATATTCTTTACAATCTTCATTTAACAGAACAAGGTTTGAAAACTCTTTCAAACTTCAAAAATGGagaatttttagattcattattgAGATTACTGCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTTTGTCAAAAGTTGCTGATCCATCAAAACTAGCGAATCTAAAGACCGAGTTTTTCATCGAATTAGTTCAGCTTCTCAAAGATCAGATATCAAAAAAGGCATCAAAAGCAACACTACAAACACTGATTCAACTCGCTGAATCCGGAAGAAATAGAGTAAAAGCAATTGAATCACGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATATTGGTACTTTTGGAGATGTTATGTCAATGTGCAGATGGAAGATATGAGCTATTAAGCCATGGTTGTGGTTTAGCTATTGTTTCAAAGAAGATTCTGAGAGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGACAAAGCAAGGGAGATCCTTAAGTTGCATGCAAAGTCTTGGATAAATTCTCATTGCATACCTTTTAATTTACTTGCTTCATACCCAACAACGGGGTGA 1329 0.3476 MDQEIEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDNHLIILTPNHTLRRLIQAWCTINTSHGVERIPTPKQPTTKTLIEKHLKDASDSSDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSSSSCSTTEFEIEATILDDDDVEGFAFDFRVDAEDEAINILYNLHLTEQGLKTLSNFKNGEFLDSLLRLLQKGNYDSRTYSVFLLKSLSKVADPSKLANLKTEFFIELVQLLKDQISKKASKATLQTLIQLAESGRNRVKAIESRCVNVLIELLLDCKERKPCEMILVLLEMLCQCADGRYELLSHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMLRIGVVAKLCLVLEVDSGNKAKDKAREILKLHAKSWINSHCIPFNLLASYPTTG 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02096 442 SUPERFAMILY ARM repeat 114 353 IPR016024 -
Tsu01g02096 442 SUPERFAMILY RING/U-box 5 86 - -
Tsu01g02096 442 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Tsu01g02096 442 CDD RING-Ubox_PUB 11 54 IPR045210 -
Tsu01g02096 442 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Tsu01g02096 442 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
Tsu01g02096 442 PANTHER WDSAM1 PROTEIN 3 439 IPR045185 GO:0061630
Tsu01g02096 442 Gene3D - 98 426 IPR011989 -
Tsu01g02096 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 3 439 - -
Tsu01g02096 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02096 Tsu-Chr1 21570159 21571487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02096 1 439 U-box Gene Family AT3G52450 52.252 1.24e-152 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02096 - - gmx:100809123 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02096 01 21570159 21571487 Tsu01g02096 01 21570159 21571487 ECH
Tsu01g02096 01 21570159 21571487 Tsu07g04105 07 46885800 46887532 PCT