Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02091 ATGGAGAGTGAGTGGAAAGCTAATGAGATATCACCAAATTGTCCAAGATGTGGTTCATCCAACACAAAATTCTGCTACTACAATAACTACAGTTTAACTCAACCAAGATACTTTTGCAAAGGATGCAGAAGGTATTGGACAAAAGGTGGATCCCTCAGAAATGTTCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAATAACAAAAGCTTATTAAGACAACAATCCTTTGATTCTCTCACTTTCAAAAATTCTGACACAATTGGTCATCATTCTTATGATCCTATTTTGAGGACTAATAATattgtttcatcttcttcttgctCCTCATTGGTGAATACTGATAGACCAAATATTGATCTTGCattagtttatgcaaatttcCTCAATAAAAAACCTGATTCTCAGAATAATTCTGATCAAATGGAAAAAAGACCTTTTGATTCTTCTTTAGAAAATTCAAGGCTATCAAATGTTGAAGTTGGTACAAGTAGTTTCAATTTGTCTGAAATTGAAATTGGTCTCAAAGGATGTTTGAATCTTAATCCAGAACAATTACCATCCACAGTAACAAATTTTAGTGAGGTTGAGAATAATCAAATGTATTGTAGTGAGTTTCATTCTATGGAGATTCTTCAGAAAGATAGAATTGATAATCAATTACAATGTAGTAATCATGATGATGGTGTGAATTTTGAGCTTCCACCTTTACCAGGTGAAGAGGATTCATCATCACATGATCATGTTTTGTGGTCCAATTCTGAAATGATGATGAACCTTCCATTTCAAGTTACTCAACCTCCACCACCTCCACCACTTCTTGGACCTGATCAAATTCATGATGCAGATTTGTTAATTGGTAATTGGAGTCCTTTTGATTTTACAAGGGATACTTCTTTTTCTAGGCCTTGA 915 0.3322 MESEWKANEISPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKSLLRQQSFDSLTFKNSDTIGHHSYDPILRTNNIVSSSSCSSLVNTDRPNIDLALVYANFLNKKPDSQNNSDQMEKRPFDSSLENSRLSNVEVGTSSFNLSEIEIGLKGCLNLNPEQLPSTVTNFSEVENNQMYCSEFHSMEILQKDRIDNQLQCSNHDDGVNFELPPLPGEEDSSSHDHVLWSNSEMMMNLPFQVTQPPPPPPLLGPDQIHDADLLIGNWSPFDFTRDTSFSRP 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02091 304 ProSiteProfiles Zinc finger Dof-type profile. 12 66 IPR003851 GO:0003677|GO:0006355
Tsu01g02091 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 300 IPR045174 GO:0003700|GO:0006355
Tsu01g02091 304 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 300 - -
Tsu01g02091 304 Pfam Dof domain, zinc finger 13 66 IPR003851 GO:0003677|GO:0006355
Tsu01g02091 304 ProSitePatterns Zinc finger Dof-type signature. 14 50 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02091 Tsu-Chr1 21513369 21514283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02091 5 298 C2C2-Dof Transcription Factor Family AT3G52440 40.132 1.05e-47 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu01g02091 zf-Dof 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02091 - - gmx:100787193 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02091 01 21513369 21514283 Tsu01g02091 01 21513369 21514283 ECH