Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02083 atgaacaaTTTATTCACCGGTTCATTCTCTCGCTTCCGTAACGAAGAAGTCGCACCAGACCGTCACCATGTGATTGATACAGACACCGTAGGTAGAGTAAACCTCGACAAATTCTTCGACGACGTGGAAGGTGTAAAAGACGATCTAAACGAGCTTGAAGTAATTTCACATAGACTTGAGAAGAGTCACGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTTAAGGATTTGTGTTCTCGTATGGACGACGACGTTTCGGTGGCTTTGAAAAAAGCGAAGATGGTGAAGCTGAAATTGGAGACGTTGGAACGATCTAATGATGCGAACCGGAATTTGCCAGGTTGTGGACCGGGTTCTTCGTCGGACCGGACAAGGAGTTCTGTTGTCAACGGTTTAAAAAAGAAGCTTAAGGATTCTATGGAGACTTTTAACCGTCTCCGTGAACTTATCTCTTCAGAGTATAGAGAGACTGTTCAACGCCGTTATTTTACCGTTACTGGCGAGAATCCTGATGATAACATGCTTGATCTGTTGATTTCCACTGGCGAGAGTGAGACCTTTCTTCAGAAAGCAATTCAAGAACAAGGCAGGGGAAGAATTATCGACACAATCAATGAGATTCAAGAGAGATACGATGCTGTCAAATACTTGGAGAAGAGTCTATTGGCGTTGCACCAAGCGTTCCTCGACATGATAGTACTGGTACAATTTCAAGGTGAGCAATTGGACGATATTGAGAGGCATGTGGCGAGTGCGAGCTCGATTATGTATGATGAATCTGAGCAGTTACATATTGCAAGGAAGCACCAGAAAAACACATGGAAATGGACCTGTTATtgtattcttcttcttcttcttcttcttcttctgatcaTCGTCTTATTTGTGGTTATCTTCACCGTGAAACCGTGGCAACATAATGGTAGTGGCGGCGGTGGGGGTAATCAACCTGCTCTAGCGCATACAACCACACCTTCAATTGCAATAGGGTAA 996 0.4247 MNNLFTGSFSRFRNEEVAPDRHHVIDTDTVGRVNLDKFFDDVEGVKDDLNELEVISHRLEKSHEQSKTVHDAKGVKDLCSRMDDDVSVALKKAKMVKLKLETLERSNDANRNLPGCGPGSSSDRTRSSVVNGLKKKLKDSMETFNRLRELISSEYRETVQRRYFTVTGENPDDNMLDLLISTGESETFLQKAIQEQGRGRIIDTINEIQERYDAVKYLEKSLLALHQAFLDMIVLVQFQGEQLDDIERHVASASSIMYDESEQLHIARKHQKNTWKWTCYCILLLLLLLLLIIVLFVVIFTVKPWQHNGSGGGGGNQPALAHTTTPSIAIG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02083 331 PANTHER SYNTAXIN 9 302 IPR045242 -
Tsu01g02083 331 Pfam Syntaxin 37 240 IPR006011 GO:0016020
Tsu01g02083 331 SMART SynN_4 30 156 IPR006011 GO:0016020
Tsu01g02083 331 Gene3D - 188 301 - -
Tsu01g02083 331 MobiDBLite consensus disorder prediction 310 331 - -
Tsu01g02083 331 SMART tSNARE_6 200 267 IPR000727 -
Tsu01g02083 331 MobiDBLite consensus disorder prediction 309 331 - -
Tsu01g02083 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 205 267 IPR000727 -
Tsu01g02083 331 Pfam SNARE domain 241 293 IPR000727 -
Tsu01g02083 331 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 302 - -
Tsu01g02083 331 CDD SynN 35 192 IPR006011 GO:0016020
Tsu01g02083 331 CDD SNARE_syntaxin1-like 204 253 - -
Tsu01g02083 331 MobiDBLite consensus disorder prediction 108 128 - -
Tsu01g02083 331 SUPERFAMILY t-snare proteins 34 254 IPR010989 GO:0016020|GO:0016192
Tsu01g02083 331 Gene3D - 33 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02083 Tsu-Chr1 21396070 21398000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02083 29 279 SNARE and Associated Proteins AT3G11820 72.112 9.40e-130 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02083 K08486 - gmx:100809258 448.743