LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g02081	atgaacaaTTTATTCACCGGTTCATTCTCTCGCTTCCGTAGCGAAGAAGTCTCACCGGATCGCCACCATGTGATTGAGATGACAGATAGTCCAGGAGCCACCGTAGGTAGAGTAAACCTCGACAAATTCTTCGACGATGTAGAAGGTGTAAAAGACGATCTAAAAGAGCTTGAAGTAATTTCACATAGACTCGAGAAGAGTCACGAACAGAGCAAAACGGTTCACGATGCTAAGGGAGTTAAGGAATTACGTTCTCGTATGGACGACGACGTTTCGGTTGCTTTGAAAAAAGCGAAGATGGTGAAGTTGAAATTGGAGGCTCTAGAACGATCTAATGCTGCGAACCGGAATTTGCCAGGGTGTGGACCGGGTTCGTCTTCGGACCGGACGAGAAGTTCTGTGGTCAACGGTTTGAAAAAGAAGCTTAAGGATTCTATGGAGACTTTTAATCGTCTCCGTGAACTTATCTCTTCGGAGTATAGAGAAACTGTTCAACGCCGTTATTTTACTGTTACTGGCGAGAATCCTGATGATAAGACGCTTGATCTGTTGATCTCCACTGGCGAGAGTGAGACCTTTCTTCAGAAAGCCATTCAAGAACAAGGCAGGGGAAGAATTATTGACACAATCAATGAGATTCAAGAGAGACACGATGCTGTCAAAGAGTTGGAGAAGAGTCTACTGGCGTTGCACCAAGTGTTCCTCGACATGACAGTACTGGTACAACTTCAAGGTGAGCAATTGGACGATATTGAGAGCCATGTGGCGAGGGCAAGCTCGTTTGTGCACACTGGAACTGAGCATTTACAGACTGCAAGGAAGCACCAGAAAAACACAAGGAAATGGACCTGTTATTGTATTATTCTTCTTCTGATCATCATCTTGTTTGTGGTTCTCTTCACCGTGAAACCGTGGCAACATAATAGTAGTGGCGGCGGCGGGGGTAATCAGCCTGCTCCAGCGCAGACAACCCcgtctcctcctcctcctccaacTGGTACTTAA	1005	0.4448	MNNLFTGSFSRFRSEEVSPDRHHVIEMTDSPGATVGRVNLDKFFDDVEGVKDDLKELEVISHRLEKSHEQSKTVHDAKGVKELRSRMDDDVSVALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRSSVVNGLKKKLKDSMETFNRLRELISSEYRETVQRRYFTVTGENPDDKTLDLLISTGESETFLQKAIQEQGRGRIIDTINEIQERHDAVKELEKSLLALHQVFLDMTVLVQLQGEQLDDIESHVARASSFVHTGTEHLQTARKHQKNTRKWTCYCIILLLIIILFVVLFTVKPWQHNSSGGGGGNQPAPAQTTPSPPPPPTGT	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g02081	334	MobiDBLite	consensus disorder prediction	118	133	-	-
	Tsu01g02081	334	SUPERFAMILY	t-snare proteins	39	265	IPR010989	GO:0016020\|GO:0016192
	Tsu01g02081	334	PANTHER	SYNTAXIN OF PLANTS 122 PROTEIN	7	310	-	-
	Tsu01g02081	334	SMART	tSNARE_6	205	272	IPR000727	-
	Tsu01g02081	334	ProSitePatterns	Syntaxin / epimorphin family signature.	216	255	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Tsu01g02081	334	PANTHER	SYNTAXIN	7	310	IPR045242	-
	Tsu01g02081	334	MobiDBLite	consensus disorder prediction	309	334	-	-
	Tsu01g02081	334	Gene3D	-	205	303	-	-
	Tsu01g02081	334	CDD	SynN	40	197	IPR006011	GO:0016020
	Tsu01g02081	334	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	210	272	IPR000727	-
	Tsu01g02081	334	Pfam	Syntaxin	42	245	IPR006011	GO:0016020
	Tsu01g02081	334	Pfam	SNARE domain	246	298	IPR000727	-
	Tsu01g02081	334	Gene3D	-	38	170	-	-
	Tsu01g02081	334	MobiDBLite	consensus disorder prediction	114	133	-	-
	Tsu01g02081	334	CDD	SNARE_syntaxin1-like	209	271	-	-
	Tsu01g02081	334	SMART	SynN_4	35	161	IPR006011	GO:0016020

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g02081	Tsu-Chr1	21379825	21382657	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g02081	30	331	SNARE and Associated Proteins	AT3G11820	70.915	3.59e-146	413

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g02081	K08486		-	gmx:100809258	487.263