Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02080 ATGAATGATTTATTCTCCGGATCTTTTTCCCGCTTCCGCAGCCCGGATCAAGTCTCGCCGGACAACCACCACCATGTCATTGAAATGTCATCACCGACGAGCGCACAAAGCGGTGTtcagctagacaaattcttcgAAGAAGTTGAAGGAGTTAAAGAGGATTTGAAGGAGCTTGATCGTCTCTACGAAAACCTTCGAGCCTCCCATGAGAGGAGCAAAACCCTTCACAGCGCGAAATCTGTGAAGGATATTCGCTCCAAAATGGATGCTGATGTGGCTTCAGCTCTTAAAAAAGCTAAATTTGTTAAACTTCGGCTCGAGGCACTTGACCGGTCCAACGAGGCTAGTAGGGCTTTGCCTGGCGCTGGACCAGGTTCGTCCTCAGACCGAACTAGAACCTCTGTGGTGAGTGGTTTGAGGAAGAAACTTAAAGACTCCATGGATAGCTTTAACGACCTTAGACAACAAATATCATCTGAATATAGAGAAACCGTACAACGTAGATACTATACTGTCACCGGAGAGAATCCCGATGACAAAACCGTTGACCTCCTCATTTCAACCGgTGAAAGTGAAACATTTTTACAAAAAGCAATCCAGCAACAAGGAAGAGCAAACATCATGGACACAATCCAAGAAATTCAAGAGAGACATGACACAGTgaaagagatagagagaaaTCTAATGGAACTTCACCAAGTGTTTATGGACATGTCTGTTTTGGTTCAATCTCAAGGTGAACAATTAGATAATATTGAAAGCCACGTGGCACGTGCTAATTCGTACGTTAGAGGTGGGGTCCAACAATTGCATGTTGCTAGGAAGCACCAAAAGAATACCAGAAAGTGGACTTGTATTGCCATCTTAATTCTTCTGATTATCATCTTGATCATAGTTTTGCCTATTgtccttaaaaaataa 921 0.4115 MNDLFSGSFSRFRSPDQVSPDNHHHVIEMSSPTSAQSGVQLDKFFEEVEGVKEDLKELDRLYENLRASHERSKTLHSAKSVKDIRSKMDADVASALKKAKFVKLRLEALDRSNEASRALPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNDLRQQISSEYRETVQRRYYTVTGENPDDKTVDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVLVQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAILILLIIILIIVLPIVLKK 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02080 306 MobiDBLite consensus disorder prediction 115 138 - -
Tsu01g02080 306 Gene3D - 39 171 - -
Tsu01g02080 306 SMART tSNARE_6 206 273 IPR000727 -
Tsu01g02080 306 MobiDBLite consensus disorder prediction 1 16 - -
Tsu01g02080 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 18 301 - -
Tsu01g02080 306 CDD SynN 41 198 IPR006011 GO:0016020
Tsu01g02080 306 Gene3D - 199 304 - -
Tsu01g02080 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Tsu01g02080 306 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Tsu01g02080 306 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu01g02080 306 Pfam SNARE domain 247 299 IPR000727 -
Tsu01g02080 306 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Tsu01g02080 306 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g02080 306 SMART SynN_4 36 162 IPR006011 GO:0016020
Tsu01g02080 306 CDD SNARE_syntaxin1-like 210 270 - -
Tsu01g02080 306 Coils Coil 41 68 - -
Tsu01g02080 306 PANTHER SYNTAXIN 18 301 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02080 Tsu-Chr1 21374835 21376824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02080 29 285 SNARE and Associated Proteins AT3G11820 72.763 4.12e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02080 K08486 - gmx:100793347 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04108 07 46919331 46922034 Tsu01g02080 01 21374835 21376824 PCT