Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02079 ATGGCTGCTGGTACTACCATTGCTTCCTTCTCCATCTACCCAAAACCCCAATCTAAAACCCTTAACTTCCCACACACAAAAACCATTTCTCCAAAATCCCTCAATCTTAAACCCCAATTATTCAACAACCCTTTTCCTTTCTCACTCTACTCTCTTCATTGTCTTCCTCCAATTTCCTACCATGATTTCCTACTCACTCGTCGACGTCGTCGAATGAtagaatatgatgatgatgatgatgatgatgaagaagaagaagaagataatgaagaagacgaagaagaagaagtcgAAGACCAACCTAGGAGACTCTTTGTTGGAAACCtgccattttcattgtcttCTTCCCAATTGGCTCAACTCTTTGGAGAAGCTGGAACTGTTGTGTCTGTTGAGATTGTGTATGATGACATGACGAATAGAAGCAGAGGATTTGCATTTGTTACAATGGAGAGTGCAGAGGATGCTGAAGAAGCAATTCAAATGTTTGATGGCACTGAAGTTGGAGGTAGGGCTATTAAGGTAAACTTCCCCGCAGTTCCCAAAGCAAGTGAAAGGGTACAAATGGGCACAATCTATAGAGGTTATGTAGACAGCCCTCACAAAATCTATGCCGGAAACCTTGGTTGGGATATGACTTCCCAGGATCTTAGAGAAGCCTTTGCTGAGCAGCCAGGCTTATTGAGTGCCAAGGTCATTTATGAAAGGAATAATGGAAAGTCTCGCGGATTTGGATTTGTCTCTTTCGAAACTTCTGAAGATGTAGAGGCTGCTTTGAGTAATATGAACGGTGTGGAGGTTCATGGTCGGCCTTTACGACTGAAGTTGGTTGTAGATAGTAATAAGCCTTCATCTCCTCCGGCAATTGATCAAAATAAAGGAAATAATGTTGATAGCTTGGAAATGTTGTttggaagaagtaaatga 927 0.3765 MAAGTTIASFSIYPKPQSKTLNFPHTKTISPKSLNLKPQLFNNPFPFSLYSLHCLPPISYHDFLLTRRRRRMIEYDDDDDDDEEEEEDNEEDEEEEVEDQPRRLFVGNLPFSLSSSQLAQLFGEAGTVVSVEIVYDDMTNRSRGFAFVTMESAEDAEEAIQMFDGTEVGGRAIKVNFPAVPKASERVQMGTIYRGYVDSPHKIYAGNLGWDMTSQDLREAFAEQPGLLSAKVIYERNNGKSRGFGFVSFETSEDVEAALSNMNGVEVHGRPLRLKLVVDSNKPSSPPAIDQNKGNNVDSLEMLFGRSK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02079 308 Gene3D - 66 185 IPR012677 -
Tsu01g02079 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 180 IPR000504 GO:0003723
Tsu01g02079 308 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 3 288 - -
Tsu01g02079 308 Coils Coil 80 100 - -
Tsu01g02079 308 MobiDBLite consensus disorder prediction 75 101 - -
Tsu01g02079 308 CDD RRM_HP0827_like 103 178 - -
Tsu01g02079 308 Gene3D - 186 286 IPR012677 -
Tsu01g02079 308 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Tsu01g02079 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 174 IPR000504 GO:0003723
Tsu01g02079 308 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 273 IPR000504 GO:0003723
Tsu01g02079 308 PANTHER OS02G0815200 PROTEIN 3 288 - -
Tsu01g02079 308 SMART rrm1_1 103 176 IPR000504 GO:0003723
Tsu01g02079 308 SMART rrm1_1 202 275 IPR000504 GO:0003723
Tsu01g02079 308 SUPERFAMILY RNA-binding domain, RBD 96 179 IPR035979 GO:0003676
Tsu01g02079 308 MobiDBLite consensus disorder prediction 76 98 - -
Tsu01g02079 308 SUPERFAMILY RNA-binding domain, RBD 198 285 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02079 Tsu-Chr1 21369556 21372461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02079 104 276 Eukaryotic Initiation Factors Gene Family AT3G16380 32.584 2.15e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02079 - - gmx:100789843 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02079 01 21369556 21372461 Tsu01g02079 01 21369556 21372461 ECH