Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02076 ATGGCTATGCAACCTGTTTACCTTAAAGAACATGAAGGACAGTATTCATCTGTGAATTCAGCTGCTCCATGGTGGAGTAATGCCTTTGGATCACAATCTGTTTATGGAGGAGAATCTTGTGGTCAAATGAAACCATTTTCATTGGAACTTTCCAACTACATAGATCAACTTCCTCCTACTAAGCACTTACCAAGAGGCGTTGAACAATTGTTTGATAAAGGACATCATACAACTAACCAATTTACCATCTTTCCAGATGACTGTAAGATGTCTCTTGATGCACAAAACCATCAGGCAACCTTATCACTGCAATCATCATTCTCTGCTGAGCCGCATAATCGTTTCGAGCTAGGGTTTAACCAACCTATGATCTGTGCAAAATATCCATATATGGATCAGTTTTACGGACTGTTCTCGACTTATGGACCTCAAATTTCGGGACGTATAATGCTTCCGCTTAGCATGACATCTGATGATGGACCGACTTACGTGAATGCTAAGCAGTACCATGGAATCATCAGACGCAGGCAATCTCGTGCCAAAGCTGTGCTTCAGAATAAACTGATAAAGCGTAACAAGCCATATATGCACGAATCACGTCATCTACATGCAATGCGGAGGCCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAAATTTCTACTGATGGAAATGGAAAAACCGGGAGTGAGATGAACAAAAAAACCGGGGGCGGCCTACAACTGCAGTCCAGTGCTTCACAGAGTTCTGAAGTCCTGCAATCTGAGGTTGGAACTTTGAATTCGTTGAAGGAAACAAATGGAGGCAGTCCAAATGTCTCGGGATCGGAGGTGACTAGCATGTATTCACAGGGAGGTCTTGACAGCTTTGCTGTCAATCATATTGGATCTTCTGTCCACTCATTGGGAGACATGATCGATACTGGACACGGTATCGTCATGCCAACAAAATGGTTTGCAACAGCTGTCACTGGAAGACAGCTGTTGCAACCATAA 996 0.4347 MAMQPVYLKEHEGQYSSVNSAAPWWSNAFGSQSVYGGESCGQMKPFSLELSNYIDQLPPTKHLPRGVEQLFDKGHHTTNQFTIFPDDCKMSLDAQNHQATLSLQSSFSAEPHNRFELGFNQPMICAKYPYMDQFYGLFSTYGPQISGRIMLPLSMTSDDGPTYVNAKQYHGIIRRRQSRAKAVLQNKLIKRNKPYMHESRHLHAMRRPRGCGGRFLNTKISTDGNGKTGSEMNKKTGGGLQLQSSASQSSEVLQSEVGTLNSLKETNGGSPNVSGSEVTSMYSQGGLDSFAVNHIGSSVHSLGDMIDTGHGIVMPTKWFATAVTGRQLLQP 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02076 331 MobiDBLite consensus disorder prediction 219 277 - -
Tsu01g02076 331 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Tsu01g02076 331 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 329 - -
Tsu01g02076 331 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Tsu01g02076 331 Gene3D - 158 219 - -
Tsu01g02076 331 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Tsu01g02076 331 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Tsu01g02076 331 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 329 IPR001289 GO:0003700|GO:0006355
Tsu01g02076 331 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02076 Tsu-Chr1 21346149 21348589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02076 1 323 CCAAT-HAP2 Transcription Factor Family AT3G05690 43.582 2.52e-58 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu01g02076 CBFB_NFYA 5.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02076 K08064 - gmx:100808195 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04111 07 46931396 46935614 Tsu01g02076 01 21346149 21348589 PCT