Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02075 ATGGTGAACGTTCCAAAGACAAAGAAAACCTACTGCAAGAACAAGCAATGCAAGAAACACACACTTCACAAGGTTACACAATACAAGAAGGGTAAAGATAGCATAGCCGCCCAAGGTAAGCGTCGTTACGATCGTAAACAGTCCGGTTATGGTGGCCAGACTAAGCCCGTCTTCCACAAGAAGGCAAAAACCACCAAGAAAATTGTTCTGAGGTTGCAATGCCAGGGTTGCAAACATGTTTCTCAACATGCAATCAAGAGGTGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGCAAAGGAACTTCTCTATTTTAG 318 0.4371 MVNVPKTKKTYCKNKQCKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02075 105 Pfam Ribosomal protein L44 19 94 IPR000552 GO:0003735|GO:0005840|GO:0006412
Tsu01g02075 105 ProSitePatterns Ribosomal protein L44e signature. 63 74 IPR000552 GO:0003735|GO:0005840|GO:0006412
Tsu01g02075 105 SUPERFAMILY Zn-binding ribosomal proteins 2 94 IPR011332 GO:0006412
Tsu01g02075 105 PANTHER 60S RIBOSOMAL PROTEIN L36A/L44 2 105 IPR000552 GO:0003735|GO:0005840|GO:0006412
Tsu01g02075 105 MobiDBLite consensus disorder prediction 28 62 - -
Tsu01g02075 105 MobiDBLite consensus disorder prediction 28 48 - -
Tsu01g02075 105 Gene3D - 1 105 - -
Tsu01g02075 105 PANTHER 60S RIBOSOMAL PROTEIN L44-LIKE 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02075 Tsu-Chr1 21330229 21331299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02075 1 105 Cytoplasmic Ribosomal Protein Gene Family AT3G23390 92.381 1.28e-67 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02075 K02929 - ini:109148838 211.846