Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02071 ATGAATACCACAGCTGATTCATCTGGATTCTTTGGCTCCAATGATATAAGTGGATTTGGTTATGGCATAGGAATTTCAATTGGGATTCTTTTACTTATCACAACAATTACACTCACATCATATTTTTGTACAAGATCACAAGTACCAAATCCTCCTAGaagaagaaataataatactacccCTCATGAATTTCTTGAGCCACAACATTCAATAATTGATTTGGGATTAGATGAAGAAACAATTATGAGTTATCCAAAGATGTTATATTCAGAAATAAAGCTTAAGAAAAATGATTCAACATCCACATGTTGTTCTATATGTTTAGGTGATTATAAAGGAAGTGATATGCTTAAGGTATTACCAGATTGtgaacatttgtttcatcttaAGTGTATAGAACCTTGGTTAAGGATGCATCCTACTTGTCCTCTTTGTAGAACTTCTCCAATTCCTACACCTCTTTCAACACCTTTGGCTGAAGTTGTTCCATTGGCAACAAGAAGAGATTAA 510 0.3118 MNTTADSSGFFGSNDISGFGYGIGISIGILLLITTITLTSYFCTRSQVPNPPRRRNNNTTPHEFLEPQHSIIDLGLDEETIMSYPKMLYSEIKLKKNDSTSTCCSICLGDYKGSDMLKVLPDCEHLFHLKCIEPWLRMHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02071 169 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 4 167 - -
Tsu01g02071 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 167 IPR045899 -
Tsu01g02071 169 Pfam Ring finger domain 104 146 IPR001841 -
Tsu01g02071 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 150 IPR013083 -
Tsu01g02071 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Tsu01g02071 169 SMART ring_2 104 145 IPR001841 -
Tsu01g02071 169 CDD RING-H2_PA-TM-RING 103 146 - -
Tsu01g02071 169 SUPERFAMILY RING/U-box 80 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02071 Tsu-Chr1 21286705 21287214 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02071 6 166 C3H Transcription Factor Family AT2G35910 61.728 4.21e-60 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02071 - - gmx:121172638 244.588