Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02053 ATGGGAAACCACTGTGTCGGATCGAGAAGAACCTCACGTTCAAAGGATGAACCAACACCCTCTAAACTTCCATCTCTATCTTGCTGGTCATGTGTAACCAGGAAAGATCATTTACACAGAACCAATCCAACAAAAGCTACAGAAACTGTTCAAAACCGGCCTCCGCAGGtagtgaaaattgaaaaggagGATGTAACACCaccccaacaacaacaaaaaccacAAACGAAAACGAGTCATGTTTCTGTTGCTACATCGTCAAAACCAAAAAGACCTCTTATTGTGAAGAGAGCAGCAAGTGCAGGGTTAAAAACAGATTCAGTTTTACAGCGAAAAACAGTTAGTCTTAGAGAGTTTTATACTTTGGGACCAAAGCTTGGACAAGGGCAATTTGGAACTACGTTTCTTTGTGTCGAGAAAGCTACTGGAAAAGAGTATGCTTGTAAATCCATCATGAAGAGGAAATTGTTGACAGAAGAGGATGTTGAAGATGTGAGGAGGGAGATTCAGATTATGCATCACTTGACCGGGTGTCCGGATCTGATTTCAATTAAGGAAGCTTCTGAGGATGCTGTTGCTGTTCATGTTGTTATGGAGTTGTGTTCGGGTGGTGAACTTTTTGATAGGATTGTCGAAAGAGGGCATTATACAGAAAGAAAAGCAGCTAAACTTGCAAGAACTATTGTTGGTGTAATTCAGTCATGTCATGCTCTTGGTGTAATGCATCGTGATCTTAAGCCGGAGAATTTTCTTTTCGTTAATCAACAAGAAGATTCTCCTCTTAAGGCTATAGATTTTGGACTATCTGCTTTTTTTAAACCAGGTGACATTTTCAATGATGTAGTAGGAAGTCCTTACTATGTTGCACCTGAAGTTTTACGCAAGCGATATGGTCCAGAAGCAGATGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGGGTTCCTCCATTTTGGGGTGAATCGGAGCAAGAGATATTTGAGGCCATTTTGAATAGTGATCTTGATTTCACATCAGATCCATGGCCTAGTATCTCCGATAGTGCAAAAGACTTGGTTATAAGGATGCTTGTCAGAGACCCTAGTAAACGGTTATCAGCTTTTGACGTTCTTCGCCATCCCTGGATGGTGGACGGAGCAGCTCCTGACAAGCCTCTTGATTCTGCAGTTTTAAGCCGCATGAAGCAGTTTACTGCAGTGAACAAGCTCAAGAAAATAGCCCTTAGAGTTATTGCAGAGAATCTCTCTGAAGAAGAAATTGCTGGACTGAAAGAAATGTTTAAGATGATCGATACTGATAATAGTGGTCAGATTACTTTTGAAGAACTCAAGATCGGACTGCAAAAATTTGGTGCCAATCTTAATGAATCTGAAATTTACGATCTAATGCAAGCTGCAGATGTTGATAACAGTGGTACAATTGACTATGGAGAATTCATAGCTGCAACATTGCATCTAAACAAAGTTGAAAGGGAAGATCATTTAGTTGCAGCTTTCTCATATTTCGATAAAGATGGAAGTGGATTTATCACTAAAGATGAGCTTCAAAAAGCTTGCGAAGAATTTGGCCTAACGAATGTCCCCTTGGAGGAAATGATCCGAGAAGCTGATCAAAATAATGATGGACGAATAGACTACAACGAATTTGTGGCTATGATGCAGAGAGGGAATGCAGCAGAAAGGAGAGGTCGAAAGGGTAGCAGTACTAGTTTTAGAATTGGATTTAGGGAGGCATTACCACATAATGTTGCAGCTGTAGATCAATGTTTCAAGCCTCTCACTCAATGGGTTAGCTGGGGCAAAGTGTGTAAGCCAAAGAGTGATGGAGGGTTGGGGGTCAGAGATCTTCGAGCCGTGAATCTAGCGTTGCTTGGTAAATGGAGATGGAGACTAATCTCTGGAGGTGTGGGTCTCTCGGGAGATATAATTTTGGCGAGATATTGCTCTTTATTTCCCTCCCCTCATCTTGGAGGGAGACTTAAGGATCTCAAGAGGGTTTCTTGCTGGTGGAGGAACGTGTCTTTACTAGGTGATCCTGATGATGCTATCTCAGACTGGTTTTCAGAGGGAGTGTCTAAAAAGGTTGGTAATGGCCACATGACTTCTTTCTGGTTTGAGCCTTGGCTAGGGGGAACCCCGTTGAGGACTCAGTTTCAAAGACTTTTTCTAGTTTCAACACAGAGTACTAGTACAGTTAGGGAGATGGATATGTGGGTCGAAGGTCAATGGTTGTGGGGCTTGAGGTGGAGAAGAGATCTCTTTGTTTGGGAGCTTAATCTCATGGAAAGTATCAATCAAATTATGGACCGCTCAACAATCTCTACAACAAATGATTATTGGTGTTGGAAGCATGACCCTAGTGGTTGCTATTCAGTTAAGTCGGCTTTTTTGGCGCTTAGTCGTTCAACAACTGATGAGGTGATCTTCTCCGTAGAGGAACAGAGGTTGCTTCCAAAAGTGTGGAAAACTTGGGCCCCTTCAAAAGTGGCGGTCTTTTCTTGGCAGCTTCTGCAGGACAGGTTACCGACTCGTCAAAATCTTTGGCATCGGGGCGTCATTGGGGATGCTAGTGCTTCTATGTGTGTGTTATGTGGTTTAGGGCCTGAATCAGCTGATCACTTATTCGGTTCTTGCAACCAAATCTCACCAATTTGGTATAGTATTCTACGATGA 2679 0.4184 MGNHCVGSRRTSRSKDEPTPSKLPSLSCWSCVTRKDHLHRTNPTKATETVQNRPPQVVKIEKEDVTPPQQQQKPQTKTSHVSVATSSKPKRPLIVKRAASAGLKTDSVLQRKTVSLREFYTLGPKLGQGQFGTTFLCVEKATGKEYACKSIMKRKLLTEEDVEDVRREIQIMHHLTGCPDLISIKEASEDAVAVHVVMELCSGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHALGVMHRDLKPENFLFVNQQEDSPLKAIDFGLSAFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQEIFEAILNSDLDFTSDPWPSISDSAKDLVIRMLVRDPSKRLSAFDVLRHPWMVDGAAPDKPLDSAVLSRMKQFTAVNKLKKIALRVIAENLSEEEIAGLKEMFKMIDTDNSGQITFEELKIGLQKFGANLNESEIYDLMQAADVDNSGTIDYGEFIAATLHLNKVEREDHLVAAFSYFDKDGSGFITKDELQKACEEFGLTNVPLEEMIREADQNNDGRIDYNEFVAMMQRGNAAERRGRKGSSTSFRIGFREALPHNVAAVDQCFKPLTQWVSWGKVCKPKSDGGLGVRDLRAVNLALLGKWRWRLISGGVGLSGDIILARYCSLFPSPHLGGRLKDLKRVSCWWRNVSLLGDPDDAISDWFSEGVSKKVGNGHMTSFWFEPWLGGTPLRTQFQRLFLVSTQSTSTVREMDMWVEGQWLWGLRWRRDLFVWELNLMESINQIMDRSTISTTNDYWCWKHDPSGCYSVKSAFLALSRSTTDEVIFSVEEQRLLPKVWKTWAPSKVAVFSWQLLQDRLPTRQNLWHRGVIGDASASMCVLCGLGPESADHLFGSCNQISPIWYSILR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02053 892 Pfam zinc-binding in reverse transcriptase 792 887 IPR026960 -
Tsu01g02053 892 Gene3D - 402 561 - -
Tsu01g02053 892 PANTHER SERINE/THREONINE-PROTEIN KINASE 38 568 - -
Tsu01g02053 892 CDD EFh 425 484 IPR002048 GO:0005509
Tsu01g02053 892 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Tsu01g02053 892 ProSiteProfiles EF-hand calcium-binding domain profile. 531 561 IPR002048 GO:0005509
Tsu01g02053 892 SUPERFAMILY Protein kinase-like (PK-like) 119 379 IPR011009 -
Tsu01g02053 892 SMART efh_1 460 488 IPR002048 GO:0005509
Tsu01g02053 892 SMART efh_1 530 558 IPR002048 GO:0005509
Tsu01g02053 892 SMART efh_1 424 452 IPR002048 GO:0005509
Tsu01g02053 892 SMART efh_1 496 524 IPR002048 GO:0005509
Tsu01g02053 892 MobiDBLite consensus disorder prediction 65 86 - -
Tsu01g02053 892 PANTHER CALCIUM-DEPENDENT KINASE 38 568 - -
Tsu01g02053 892 ProSiteProfiles EF-hand calcium-binding domain profile. 492 527 IPR002048 GO:0005509
Tsu01g02053 892 SMART serkin_6 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02053 892 ProSiteProfiles EF-hand calcium-binding domain profile. 456 491 IPR002048 GO:0005509
Tsu01g02053 892 ProSitePatterns EF-hand calcium-binding domain. 539 551 IPR018247 -
Tsu01g02053 892 ProSitePatterns EF-hand calcium-binding domain. 433 445 IPR018247 -
Tsu01g02053 892 CDD STKc_CAMK 119 377 - -
Tsu01g02053 892 Pfam Protein kinase domain 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02053 892 Gene3D Transferase(Phosphotransferase) domain 1 206 401 - -
Tsu01g02053 892 MobiDBLite consensus disorder prediction 63 89 - -
Tsu01g02053 892 SUPERFAMILY EF-hand 416 557 IPR011992 -
Tsu01g02053 892 ProSiteProfiles Protein kinase domain profile. 120 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02053 892 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g02053 892 ProSitePatterns EF-hand calcium-binding domain. 469 481 IPR018247 -
Tsu01g02053 892 CDD EFh 496 556 IPR002048 GO:0005509
Tsu01g02053 892 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Tsu01g02053 892 Pfam EF-hand domain pair 425 485 IPR002048 GO:0005509
Tsu01g02053 892 Pfam EF-hand domain pair 497 556 IPR002048 GO:0005509
Tsu01g02053 892 ProSiteProfiles EF-hand calcium-binding domain profile. 420 455 IPR002048 GO:0005509
Tsu01g02053 892 ProSitePatterns Protein kinases ATP-binding region signature. 126 153 IPR017441 GO:0005524
Tsu01g02053 892 Gene3D Phosphorylase Kinase; domain 1 123 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02053 Tsu-Chr1 21023888 21033488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02053 48 578 EF-hand Containing Proteins AT3G10660 71.349 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g02053 Pkinase 4.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02053 K13412 - gmx:100783079 915.605