Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02038 ATGTATATTGCAGCTGAGGATATTGAAGCAGGAATTAGGACAAAGACAAAGTTTCAAACTGAACCTACTCTACCTATATATCTAAAgTTCACTGATGTGACCTACAAGGTAGTACTGAAAGGCATGACATCAAGTGAGGAGAAAGATATCTTGTATGGGATAAGTGGTTCTGTAAATCCAGGTGAAGTTTTAGCATTGATGGGTCCCTCAGGAAGTGGAAAGACTACTCTTTTAAATCTTCTTGGAGGAAGGCTAACTCAGCACACAGTTGGTGGTTCTATCACTTACAATGATCAATCATATTCCAAGTTCCTTAAAAGCAGGATAGGATTTGTGACACAAGATGATGTTTTGTTTCCTCACCTGACCGTGAAAGAGACGTTAACATACGCAGCCCGGTTAAGACTTCCAAAGACATTCACTAAGGAGCAAAAGGAAAAAAGAGCTTTAGATGTCATCTATGAGCTTGGCTTGGAAAGGTGCCAAGATACAATGATTGGTGGTTCGTTTGTTCGCGGAATATCTGGTGGAGAGAGGAAAAGAGTTTGTATTGGAAATGAGATCATAATCAACCCTTCTATTCTGTTTCTTGATGAACCAACATCTGGTTTGGATTCAACAACCGCCTTGAAGATTGTTCAGATGCTGCAAGACATAGCAGAGGCGGGTAAAACAGTAGTGACGACAATTCACCAACCGTCAAGTAGACTCTTCCACAAATTTGACAAGTTGATCCTTCTTGGGAAAGGGAGTTTGCTTTACTTTGGAAAAGCATCAGAAGCGATGAATTACTTCCAATCTATAGGATGTTCACCGCTTATTTCCATGAACCCGGCAGAGTTTTTGCTAGACCTTGCTAATGGAAACATAAATGATGTTTCCGTCCCATCAGAGTTGGAGGATAAAGTGCTTATTGGAAATGCAGAAGTTGAAAAATATAATGGAAAACCATCACCAGCAGTAGTTCATGAgTATCTAGTGGAGGCATATGAATCTCGAGTTGCGGAAAcggagaagaaaaaaataatggtTTCTGTACCTCAAGATGAAGCTTTGAAGGATAAATTATGTTCACAAAGACAATGGGGAGCAAGGTGGGATGAGCAATTTTCGATACTTTTTTGGAGAGGAATCAAAGAAAGGAAGCATGACTATTTTAGCTGGTTGAGAATCACACAAGTTTTATCCACTGCATTCATCTTAGGATTACTCTGGTGGCAATCAGATACTAAGAACCCAAAAGATCTGCAAGATCAgGCAGGACTACTTTTCTTTATAGCTGTGTTCTGGGGATTCTTTCCGGTCTTTACTGCGATATTTACATTTCCTCAAGAGAGAGCCATGTTGAATAAAGAACGCGCAGCAGATATGTACAGATTAAGTGCATACTTCCTTGCTAGAACTACAAGTGACCTTCCATTAGACCTGATATTACCAGTGCTTTTTCTCCTCGTTGTTTACTTCATGGCTGGTCTGAGACTAAGCACTGCCCCCTTTTTCCTCACCATTCTTACTGTTTTCCTCTGCATCATTGCAGCTCAGGTATGCTTTCAGAAATTACTAACAAGACAATACaataaaaactaa 1587 0.3926 MYIAAEDIEAGIRTKTKFQTEPTLPIYLKFTDVTYKVVLKGMTSSEEKDILYGISGSVNPGEVLALMGPSGSGKTTLLNLLGGRLTQHTVGGSITYNDQSYSKFLKSRIGFVTQDDVLFPHLTVKETLTYAARLRLPKTFTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGISGGERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMNYFQSIGCSPLISMNPAEFLLDLANGNINDVSVPSELEDKVLIGNAEVEKYNGKPSPAVVHEYLVEAYESRVAETEKKKIMVSVPQDEALKDKLCSQRQWGARWDEQFSILFWRGIKERKHDYFSWLRITQVLSTAFILGLLWWQSDTKNPKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLPLDLILPVLFLLVVYFMAGLRLSTAPFFLTILTVFLCIIAAQVCFQKLLTRQYNKN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02038 528 SMART AAA_5 60 251 IPR003593 -
Tsu01g02038 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 267 IPR027417 -
Tsu01g02038 528 Pfam ABC-2 type transporter 368 516 IPR013525 GO:0016020|GO:0140359
Tsu01g02038 528 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 5 514 - -
Tsu01g02038 528 Pfam ABC-2 type transporter 231 334 IPR043926 GO:0140359
Tsu01g02038 528 Pfam ABC transporter 53 202 IPR003439 GO:0005524
Tsu01g02038 528 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524
Tsu01g02038 528 Gene3D - 27 269 IPR027417 -
Tsu01g02038 528 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 274 IPR003439 GO:0005524
Tsu01g02038 528 PANTHER PIGMENT PERMEASE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 5 514 - -
Tsu01g02038 528 CDD ABCG_EPDR 25 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02038 Tsu-Chr1 20929506 20935000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02038 26 303 Calmodulin-binding Proteins AT2G36910 27.817 2.25e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02038 K05681 - gmx:100798801 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02038 01 20929506 20935000 Tsu01g02038 01 20929506 20935000 ECH
Tsu07g04126 07 47071079 47082291 Tsu01g02038 01 20929506 20935000 PCT