Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02017 ATGGCTGAAGTCGCTATTCCAGAACCTGTTGCTATCGTTTCAGATCCCTCTCAGATTGAAGTCAAACTCTTCAATCGCTGGACCTTTGATGATGTTcagCTTTCTGATATGTCACTGAGTGATTATATCGGCGTTCTGGCATCGAAGCATGGGACATATGTTCCACACACTGCTGGTAGATACTCGAATAAGCGATTCAGGAAAGCCAATTGTCCCATTGTTGAGAGGTTGACAAACTCTCTCATGATGCATGGGAGGAACAATGGAAAGAAGCTTATGGCGGTTAAAATCATTAAACACGCTAtggaaattatttatttgctaACTGACCAGAACCCAATTCAGGTTATCTGTGATGCTATCGTCAACAGTGGCCCTCGTGAAGATGCAACTCGTATTGGTTCTGCTGGAGTTGTGAGAAGACAGGCTGTGGATATCTCACCCCTTCGCCGTGTTAACCAAGCCATCTATCTTCTAACTACTGGTGCACGCGAAGCTTCCTTTAGAAATATTAAGACAGTTGCTGAATGTTTGGCCGATGAGCTTATTAATGCAGCAAAAGGTTCATCCAATAGTTATGCGATCAAGAAGAAAGATGAAATTGAGAGAGTCGCCAAGGCAAATCGTTAA 630 0.4206 MAEVAIPEPVAIVSDPSQIEVKLFNRWTFDDVQLSDMSLSDYIGVLASKHGTYVPHTAGRYSNKRFRKANCPIVERLTNSLMMHGRNNGKKLMAVKIIKHAMEIIYLLTDQNPIQVICDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREASFRNIKTVAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02017 209 PANTHER RIBOSOMAL PROTEIN S7 11 209 IPR000235 GO:0006412
Tsu01g02017 209 SUPERFAMILY Ribosomal protein S7 22 209 IPR036823 -
Tsu01g02017 209 CDD uS7_Eukaryote 22 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Tsu01g02017 209 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 2 209 IPR000235 GO:0006412
Tsu01g02017 209 PANTHER 40S RIBOSOMAL PROTEIN S5 11 209 - -
Tsu01g02017 209 TIGRFAM uS7_euk_arch: ribosomal protein uS7 20 209 IPR005716 GO:0003735|GO:0006412|GO:0015935
Tsu01g02017 209 Pfam Ribosomal protein S7p/S5e 67 209 IPR023798 -
Tsu01g02017 209 ProSitePatterns Ribosomal protein S7 signature. 75 101 IPR020606 GO:0003723|GO:0003735|GO:0006412
Tsu01g02017 209 Gene3D Ribosomal protein S7 domain 7 209 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02017 Tsu-Chr1 20675776 20678749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02017 20 209 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 88.947 8.22e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02017 K02989 - gmx:100815850 356.295