Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02008 ATGCCCCATTTCATTACAACTCATGAAAGATCCTCTGTTACTGTCTCAACAGGCATAACCTACGACAGACAAAGCATTGAAAAATGGCTCTTTTCATCACAAAACCAAACATGTCCTGTCACTAAACAACAACTCACACATGATGATAATCATCTCATTATTCTCACACCAAATCATACTCTTCGTAGACTCATTCAAGCATGGTGCACCATTAACACTTCTCATGGTGTTGATAGAATTCCAACTCCAAAACTACCAACAACAAAGACCCTTATAGAGAAACACCTCAAAGATGCTTCTGATTCTTTAGATTCTCCTCATTTGCTTATTCAATCCctcaaaaaccttaaaacaaTCGCATCGGAGAGCGAAACAAATCGAAGATGTATCGAATCGGCTGGCGCTGTTGAGTTCTTAGCATcaatagtaacaaaaaataatacaagtTCTTTATCATCATGTTCAACAACAGAATTTCAAATTGAAGCTaccattattgatgatgatgatgttgaaggTTTTGCTTTTGACTTCAGAGTTGATGCAGAAGATGAAGCTACAAATATTCTTTACAATCTTCATTTAACAGAGCAAGGTTTGAAAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGATTCTTTATTGAGATTAATGCAAAAGGGTAACTATGATTCAAGAACATATTCAGTTTTTCTGTTGAAATCTATGTCAAAAGTTGCTGCTCCATCAAAACTAGCGAATCTAAAGACCGAGTTTTTCATCGAATTAGTTCAGCTTCTGAAAGATCAGATACCAAAAAAGGCATCAAAAGCAACACTACAAACATTGATTCAACTCGTCGAATCCGGAAGAAATAGAGTAAAAGCAATTGAATCACGGTGTGTTAATGTTTTGATAGAACTTCTTCTTGATTGCAAAGAAAGAAAGCCATGTGAGATGATTTTAGTACTTTTGGAGATGTTGTGTCAATGTGCTGATGGAAGATATGAGCTATTAAGCCATGGTTGTGGTTTAGCTATTGTTTCAAAGAAGATTATGACAGTTTCAACATTGGCTAATGATAGAGCTGTGAGGATTCTTCTATCTGTTTCAAGATTCTCTGCTACACATTTTGTTGTTCAAGAAATGTTGAGAATTGGTATTGTTGCTAAGCTTTGTTTGGTTCTTGAAGTTGATAGTGGAAATAAGGCTAAGGACAAAGCAAGAGAGATACTTAAATTGCATGCAAAGTCTTGGAAGAATTCTCATTGCATATCTTCTAATTTACTTGCTTCATACCCAAAGAGTGGATGA 1296 0.3356 MPHFITTHERSSVTVSTGITYDRQSIEKWLFSSQNQTCPVTKQQLTHDDNHLIILTPNHTLRRLIQAWCTINTSHGVDRIPTPKLPTTKTLIEKHLKDASDSLDSPHLLIQSLKNLKTIASESETNRRCIESAGAVEFLASIVTKNNTSSLSSCSTTEFQIEATIIDDDDVEGFAFDFRVDAEDEATNILYNLHLTEQGLKTLLNFKNGEFLDSLLRLMQKGNYDSRTYSVFLLKSMSKVAAPSKLANLKTEFFIELVQLLKDQIPKKASKATLQTLIQLVESGRNRVKAIESRCVNVLIELLLDCKERKPCEMILVLLEMLCQCADGRYELLSHGCGLAIVSKKIMTVSTLANDRAVRILLSVSRFSATHFVVQEMLRIGIVAKLCLVLEVDSGNKAKDKAREILKLHAKSWKNSHCISSNLLASYPKSG 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02008 431 Pfam U-box domain 13 70 IPR003613 GO:0004842|GO:0016567
Tsu01g02008 431 SUPERFAMILY RING/U-box 13 76 - -
Tsu01g02008 431 ProSiteProfiles U-box domain profile. 1 75 IPR003613 GO:0004842|GO:0016567
Tsu01g02008 431 SMART Ubox_2 13 68 IPR003613 GO:0004842|GO:0016567
Tsu01g02008 431 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 12 428 - -
Tsu01g02008 431 Gene3D - 86 420 IPR011989 -
Tsu01g02008 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 78 IPR013083 -
Tsu01g02008 431 SUPERFAMILY ARM repeat 102 395 IPR016024 -
Tsu01g02008 431 PANTHER WDSAM1 PROTEIN 12 428 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02008 Tsu-Chr1 20608563 20609858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02008 10 428 U-box Gene Family AT3G52450 49.057 2.19e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02008 - - gmx:100809123 504.597