Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02003 ATGAGGGGAAGAAGCTACAGTTACAGTCCATCACCTCCAAGACATTACGGCGGTCGAAGGGGACGCAGTCCTAGTCCTAGGGGACGTTACGGAGGAGGACGTTACAGAGGCCGTGATAGGGATTTGCCAACAAGTCTCCTTGTCCGGAACCTGCATAAAGATTGCAGGCCGGAAGATCTGCATGATCCATTTAGCCAGTTTGGTCCTGTCAAAGATATTTACTTGCCTCGTGATTATTATACTGGGGAGCCCAGGGGTTTTGGGTTTGTTCAATTTGTGGACCCAGCAGATGCTGCAGATGCAAAATATCACATGGATGGTCAAGTTCTTCTTGGTAGAGAGTTAACTGTGGTATTTGCTGAAGAAAACCGAAAGAAGCCTCAAGAAATGAGAGCAAGAGAACGTGGGAGGTCATATGATTATAGACGATCTCCACGCCGTCGTTCTCGTTCACCACGCTATGCAAGAACCTATTCTCCTAGTCCAGACTATTCTCCTTCACCAAGACAAAGGCGATATTCCAGATATTCCAGGTCAATCTCACCAAGGGACACAAGGTATAGGCAGGGATCATACTCCAGGTCCCCTTATAGTAGATCACCTTATGCATCAAGGAGCCCAAGTCGAGGGAGGAGTTACAGCAGGAGCCGTAGTCCAGGGTACTCTAGGTGA 672 0.4836 MRGRSYSYSPSPPRHYGGRRGRSPSPRGRYGGGRYRGRDRDLPTSLLVRNLHKDCRPEDLHDPFSQFGPVKDIYLPRDYYTGEPRGFGFVQFVDPADAADAKYHMDGQVLLGRELTVVFAEENRKKPQEMRARERGRSYDYRRSPRRRSRSPRYARTYSPSPDYSPSPRQRRYSRYSRSISPRDTRYRQGSYSRSPYSRSPYASRSPSRGRSYSRSRSPGYSR 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02003 223 Gene3D - 38 156 IPR012677 -
Tsu01g02003 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Tsu01g02003 223 MobiDBLite consensus disorder prediction 1 41 - -
Tsu01g02003 223 MobiDBLite consensus disorder prediction 124 141 - -
Tsu01g02003 223 MobiDBLite consensus disorder prediction 154 175 - -
Tsu01g02003 223 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 1 219 - -
Tsu01g02003 223 SMART rrm1_1 45 118 IPR000504 GO:0003723
Tsu01g02003 223 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 219 - -
Tsu01g02003 223 MobiDBLite consensus disorder prediction 124 223 - -
Tsu01g02003 223 SUPERFAMILY RNA-binding domain, RBD 44 150 IPR035979 GO:0003676
Tsu01g02003 223 MobiDBLite consensus disorder prediction 183 223 - -
Tsu01g02003 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 115 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02003 Tsu-Chr1 20461004 20463699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02003 44 190 Eukaryotic Initiation Factors Gene Family AT3G16380 27.211 3.47e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02003 K12900 - gmx:100816913 198.749