Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02001 ATGGCACTTTCACTCCTCCTCCGCtcggcttcttcttcttcgagGTTCCGTAAATCATTTGGCCTATTGGCATTTACATTCTCTACCACTTCACCGTCTAACCCACCTCCCATTCGAGTTTCCCTCACCGACTCAGTGGGTCGCGCTGTCTTTGCAACTCGCCCAATCCCTTCCGGAGATCTCATCCACACCGCCGAACCTGCTGTCTGCCATCCTTCACCTTCCTCCCTCCATCCCGTCTGCTACTCATGTCTCTCCAGACTCCCTAACCTCTCCTCTTCCTCCCCCTTTTGTTCTCACCGTTGCCACCAACGCAGTAAGGAATATTACGATGTTGAGATGAAAGCAAATTGGACAGATTTTGATAACTATTGCCGGAACCAAGGTTTAAAATTTCCCTTCCTAGTAAAGCGCTTGGCTTGCATGATCCTATCAGGAGTTGCCAAAAGTGACAGTATCGACATACTTCAACCTGCCAATTTGACGCCTGGGATGATTTTAGAGATGGAAGAGGAGTTCACCTTGCTAAGGAATGCCTTCACAAAAGCACTTATTGAAGATGAACAAATTGCCTTTTTAACCAAGCAATGGTACGTTAGTATTTTGGCACGAATTCGAATCAATGCATTTCGCATTGAGTTGGCTGGTGGTGGATCATATGAAGATCTTCTTTCTTCAGCATTTGCATCTGTAGAAGCTGAAGCTGCTATTGGAAATGCTGTCTATATACTTCCTTCATTCTATAATCATGACTGTGATCCTAATGCACACATTATATGGATAGATAATGCAATGGCAAAATTGAAGACCCTCCGCGACATTGATGAAGGTGAAGAACTGAGAATCTGCTATATCGATACCAGTATGGACCGCGATGCTCGGCGAGAACTATTGTTTCGAGGATTTGGATTTCATTGCAATTGTAGTAGGTGTTTGCATGGTGGTGGTGGAAGTAGTGGAAATGTGATTAAGTCTTCTAATTTATCTTCTGTTTTGACAGAAAGATCATCATTGGTTAGTTCAGATCATGGTGCAACAACATTAATGGATGCTGGAAGTTTGGTTTTGTCACCAAATGGTAAAACTCAAGGTGATATTGTTGTTAAGGATATGGTTCCTTTTGGTGGAACAACATCTACTACTACATTAATTAATGGACTTGAAGATGATGGAATTGGCATTGTTAAATTTCTTAGAGGGAAGAAGTTTTTTGTTACTGGTGCTACTGGATTTCTAGCAAAAGTTCTTATTGAGAAGATTCTAAGGACAGAACCTGAAGTTGGAAAAATGTATCTCTTGATCAAAGCAAAGAATAAGCAAGCTGCAATGGAGAGATTAAATAatgaaATCATAAATACAGAACTTTTCAGATGCCTTAGACAAATCCATGGAAAATCATACCAATCCTTTATGTTGAGCAAGCTAGTTCCTATTGTAGGAGATATTTGTGAAACTAATCTTGGATTAGATGAAGATTTATCTAATGTTATTGCTGATGAAGTTGATGTTATTGTAAATTCTGCAGCTAATACAACTTTTGATGAAAGataTGATACTGCAATCAACATAAACACTCGAGGGCCGTGTCGCCTTATGGCGATCGCGAAAAAGTGCAAGAAGCTTAAGCTCTTTCTTCATGTTTCAacagCTTATGTGAATGGACAAAGGCAGGGTAGAATAATGGAAAGACCATTTAGCATTGGTGATTGCATAGCAAGAGAGAAACTTATATCTGGTGTTCCACCAAAATTCCTTCCTAGTTTggatattgaaaatgaaataaatcttGTTTTAAAGAACAAAGGTAACAACAACATTGAAGATAATTTGCTAACTCAAAAGATGAGGGAGATGGGGCTAGAGAGggCTAAGAGATTTGGTTGGCAAGATACTTATGTGTTCACAAAGGCAATGGGAGAAATGATGATAGACAAATTGAGGGAAGATATTCCAATTGTTGTAATTAGACCAAGTGTTATTGAGAGCACTTTGAGTGAACCATTTCCTGGATGGATGGAAGGAAATAGGATGATGGATCCAATAGTTCTTTGCTATGGTAAAGGACAGCTATCTGGTTTCTTGGTAGATCCTAATGGAGTTCTTGATGTGGTCCCAGCAGACATGGTTGTTAATGCAACATTAGCAGCAATGGCAAAACATGGAACAACACAAAAAGCAGATATCAATGTGTACCAAATTGCTTCATCTGTGGTTAACCCTTTAGTCTTCCAAGACCTTACAAGGCTTCTCTATGAACATTACACTTCATCACCATGCATTGACTCAAAGGGTAATCCAATTCAAGTTCCACTTATGAAATTGTTTAGCTCTTCAGAAGAATTCTCTGGCCACCTATGGAGAGATGCTTTTCAGAAAAGTGGTTTGACAACATTGGCTTCCTCAAATGGAAAGATGTctcaaaaacttgaaaatatCTGTAAAAAATCAGTTGAGCAAGCAAAGTACTTGGCCAAAATCTATGAACCTTACACATTTTATGGTGGAAGGTTTGACAATAGTAATACACAAAGATTGATGGAAATAAtgtctgaagaagaaaagagggAATTTGACTTTGATGTAAAAAGCATAGATTGGAAAGATTATATCACAAATGTTCATATACCTGGTCTAAGGAGACATGTCATGAAAGGAAGAGGAATGAGCAATCAAGATAATTTCCGATTTCTTCGTAACGCTGATCGTGATTTCGTGATTGTGATTGTAGATTGA 2733 0.3787 MALSLLLRSASSSSRFRKSFGLLAFTFSTTSPSNPPPIRVSLTDSVGRAVFATRPIPSGDLIHTAEPAVCHPSPSSLHPVCYSCLSRLPNLSSSSPFCSHRCHQRSKEYYDVEMKANWTDFDNYCRNQGLKFPFLVKRLACMILSGVAKSDSIDILQPANLTPGMILEMEEEFTLLRNAFTKALIEDEQIAFLTKQWYVSILARIRINAFRIELAGGGSYEDLLSSAFASVEAEAAIGNAVYILPSFYNHDCDPNAHIIWIDNAMAKLKTLRDIDEGEELRICYIDTSMDRDARRELLFRGFGFHCNCSRCLHGGGGSSGNVIKSSNLSSVLTERSSLVSSDHGATTLMDAGSLVLSPNGKTQGDIVVKDMVPFGGTTSTTTLINGLEDDGIGIVKFLRGKKFFVTGATGFLAKVLIEKILRTEPEVGKMYLLIKAKNKQAAMERLNNEIINTELFRCLRQIHGKSYQSFMLSKLVPIVGDICETNLGLDEDLSNVIADEVDVIVNSAANTTFDERYDTAININTRGPCRLMAIAKKCKKLKLFLHVSTAYVNGQRQGRIMERPFSIGDCIAREKLISGVPPKFLPSLDIENEINLVLKNKGNNNIEDNLLTQKMREMGLERAKRFGWQDTYVFTKAMGEMMIDKLREDIPIVVIRPSVIESTLSEPFPGWMEGNRMMDPIVLCYGKGQLSGFLVDPNGVLDVVPADMVVNATLAAMAKHGTTQKADINVYQIASSVVNPLVFQDLTRLLYEHYTSSPCIDSKGNPIQVPLMKLFSSSEEFSGHLWRDAFQKSGLTTLASSNGKMSQKLENICKKSVEQAKYLAKIYEPYTFYGGRFDNSNTQRLMEIMSEEEKREFDFDVKSIDWKDYITNVHIPGLRRHVMKGRGMSNQDNFRFLRNADRDFVIVIVD 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02001 910 Gene3D - 80 124 - -
Tsu01g02001 910 Gene3D SET domain 49 311 IPR046341 -
Tsu01g02001 910 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 395 725 IPR036291 -
Tsu01g02001 910 CDD SET_SMYD 224 311 - -
Tsu01g02001 910 CDD FAR-N_SDR_e 401 758 - -
Tsu01g02001 910 Gene3D - 125 209 - -
Tsu01g02001 910 PANTHER FATTY ACYL-COA REDUCTASE 377 885 - -
Tsu01g02001 910 Gene3D - 396 825 - -
Tsu01g02001 910 PANTHER MALE STERILITY PROTEIN 2-RELATED 377 885 IPR026055 GO:0080019
Tsu01g02001 910 SUPERFAMILY SET domain 35 309 IPR046341 -
Tsu01g02001 910 CDD FAR_C 821 883 IPR033640 -
Tsu01g02001 910 ProSiteProfiles SET domain profile. 36 285 IPR001214 GO:0005515
Tsu01g02001 910 Pfam Male sterility protein 405 713 IPR013120 -
Tsu01g02001 910 Pfam SET domain 47 284 IPR001214 GO:0005515
Tsu01g02001 910 SMART set_7 36 291 IPR001214 GO:0005515
Tsu01g02001 910 Pfam Male sterility protein 811 884 IPR033640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02001 Tsu-Chr1 20385849 20400171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02001 321 887 Acyl Lipid Metabolism Gene Families AT3G11980 64.000 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g02001 NAD_binding_4 1.1e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02001 K13356 - gmx:100776505 961.444