Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02000 ATGAGAACAAGTTCATGGGCAGAATCTGCTGATAATGCAGCTAATGCCTCATCGGCACGCCCTGCCAAGCCGGCATATGTACCTCCGCATCTTAGGAACCGGTCAGTGGCTCCAGCCGAGCCTCCTTCATTTGTGACTAATGCTAATGATAGGGGCTCAGGTAATTGGGGTGGTTCCTCTAACTTTAGGCCGGATTTTGGTAATGGTGGTAGGCAAGGATATGGTTCTGGTGGTGGGTTTAACAATAGAGGAGGAGCGGGGGCGGGGATGGGGGTGGGGGTGGGGAGGGAACGTGGGGGAAGACGTGAGGTGAATCCTTTTGAGAATGATATTGATGAATCTTTTAGCGAGCAAGAGAATACGGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTTCCCGCTCCTGTGAATACATTTGCGGAAATAGATTTAGGTGATGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACACCGGTTCAGAGGTATGCTATACCAATTTCTCTTGCAGGGAGAGATTTGATGGCTTGTGCTCAGACCGGGTCAGGAAAGACCGCTGCATTTTGCTTTCCTATTATAAGTGGAATCCTTAGGGAGCCGTATGCTCAAAGACCCCGTGTGGCACGGACTGCTTATCCTCTTGCACTTATCCTGTCCCCTACCCGGGAGCTTTCTTGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACCGGTGTCAAGGTTGTAGTTGCTTATGGAGGAGCCCCGATCACACAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCAACTCCAGGACGATTAGTAGATTTGCTTGAGAGGGCTAGGGTGTCACTACAGATGATAAGATATTTGGCTCTTGACGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATTGTTGAACAAATGGACATGCCTCCTCCAGGCATGAGACAGACACTGCTGTTTAGTGCAACATTTCCTAAAGAGATACAGAGACTTGCATCAGATTTTCTTGCAAGTTATATTTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACCGATCTAATTGCTCAAAGAGTAGAATATGTGCTTGAGTCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTcagagagaaaatgatgtgaaTGGCAAGCAAGGTCTGACTTTAGTTTTTGTGGAAACAAAAAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAACGGGTTTCCTGCAACTTGCATTCATGGTGATAGAACACAGCAAGAAAGAGAACAAGCATTGAGGTCATTCAAGACTGGAAACACTCCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGACTTGATATTCCAAGGGTAGCACATGTGGTAAACTTTGATCTTCCTAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGACTAGCAACAGCCTTCTTCAATGACAGTAATTTGTCAATGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACCCGTTATGCAGCAAGGACTCCTTATGGTGGCAGTAGAAATAAGCGGGCCGGGGGAGCCCGTTTTGGTGGCCGTGATGTTAGGAAGGAGAACTCATATAATAAAGGAAATGATTACTACGGCGGAACTGGTGGTGGTTATGGGGTTCCTGCAGGTTATGGTGGAGGGTATGGTCAAGGTGTAACAAGTGCTTGGGATTAG 1803 0.4609 MRTSSWAESADNAANASSARPAKPAYVPPHLRNRSVAPAEPPSFVTNANDRGSGNWGGSSNFRPDFGNGGRQGYGSGGGFNNRGGAGAGMGVGVGRERGGRREVNPFENDIDESFSEQENTGINFDAYDDIPVETSGENVPAPVNTFAEIDLGDALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILREPYAQRPRVARTAYPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLASYIFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENDVNGKQGLTLVFVETKKGADALEHCLCVNGFPATCIHGDRTQQEREQALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDSNLSMAKPLADLMQEANQEVPAWLTRYAARTPYGGSRNKRAGGARFGGRDVRKENSYNKGNDYYGGTGGGYGVPAGYGGGYGQGVTSAWD 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02000 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 360 IPR014001 -
Tsu01g02000 600 MobiDBLite consensus disorder prediction 40 61 - -
Tsu01g02000 600 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 33 571 - -
Tsu01g02000 600 Gene3D - 103 362 IPR027417 -
Tsu01g02000 600 MobiDBLite consensus disorder prediction 1 16 - -
Tsu01g02000 600 Pfam Helicase conserved C-terminal domain 384 499 IPR001650 -
Tsu01g02000 600 SMART ultradead3 164 375 IPR014001 -
Tsu01g02000 600 MobiDBLite consensus disorder prediction 548 569 - -
Tsu01g02000 600 MobiDBLite consensus disorder prediction 553 567 - -
Tsu01g02000 600 CDD SF2_C_DEAD 372 508 - -
Tsu01g02000 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 387 538 IPR001650 -
Tsu01g02000 600 SMART helicmild6 418 499 IPR001650 -
Tsu01g02000 600 Pfam DEAD/DEAH box helicase 169 349 IPR011545 GO:0003676|GO:0005524
Tsu01g02000 600 Gene3D - 363 541 IPR027417 -
Tsu01g02000 600 CDD DEADc_DDX3_DDX4 146 366 IPR044763 GO:0003724|GO:0005524
Tsu01g02000 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 145 173 IPR014014 GO:0003724
Tsu01g02000 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 516 IPR027417 -
Tsu01g02000 600 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 33 571 - -
Tsu01g02000 600 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02000 Tsu-Chr1 20380477 20385767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02000 143 531 Eukaryotic Initiation Factors Gene Family AT3G19760 29.923 2.58e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02000 K11594 - gmx:100818326 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02000 01 20380477 20385767 Tsu01g02000 01 20380477 20385767 ECH