Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01993 ATggataaaaaaaacattgaaagaGAAACACATGACTTAATGAATGTTGAGTCATTCTCTCAACTTCCCTTCATCCGCCCTCCTCCCACAATCAAAGAAAAAGGCATCCGTCTCTTCGGCATCGAATTTGGCGCTACCACGGAAGACAACGAAGACTCCGAGTCACCGGAAACAactaccaacaacaacaacattaacaCATTTGAAGCtgaaaacaacaacaaagataacaacaatgaaaacaatagaagatttgaatGTCATTATTGTTGTAGAAACTTCCCAACTTCACAAGCTTTAGGTGGTCATCAAAACGCACACAAAAGAGAACGCCAACATGCTAAACGACAACACCTTCAATCAACTATGGTACATGCTACTACTTTCTCTGATCCACAtctttatcatcatcatcatcagcaacaacaacatcCTCTCTACAGAttcacatcatcatcaccatcatcattatcatcatcacctTCTTATCCAACATGGAACACAAACTCATCAAATTCACATGGTGCAAGATTTTATAACCATCCAACTTCTTCTTACTCTCATCAACAACCTATTAATGGTAGTCCTTTAGCTTTTTGGCGTAATCCAAATGGCGCCGATTATAGTAACCCTAGTTTCAGCCATGAACGCCCTTTACCTTTGCTTGCTTCCGAGGAAAGAGCGAATTTTTCGCACAGTGGTCATGGAgtatcttcttcttctgcttCCCATAATCGCTACGCTTATGACTCTAAACGTAGCGACCATGTTAGTTTGGATCTTCATCTCTAA 792 0.3232 MDKKNIERETHDLMNVESFSQLPFIRPPPTIKEKGIRLFGIEFGATTEDNEDSESPETTTNNNNINTFEAENNNKDNNNENNRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRQHLQSTMVHATTFSDPHLYHHHHQQQQHPLYRFTSSSPSSLSSSPSYPTWNTNSSNSHGARFYNHPTSSYSHQQPINGSPLAFWRNPNGADYSNPSFSHERPLPLLASEERANFSHSGHGVSSSSASHNRYAYDSKRSDHVSLDLHL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01993 263 SUPERFAMILY beta-beta-alpha zinc fingers 81 113 IPR036236 -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 231 247 - -
Tsu01g01993 263 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 46 79 - -
Tsu01g01993 263 PANTHER ZINC FINGER PROTEIN GIS 1 263 - -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 230 251 - -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 135 168 - -
Tsu01g01993 263 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 112 IPR013087 -
Tsu01g01993 263 PANTHER ZINC FINGER PROTEIN GIS 1 263 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Tsu01g01993 263 MobiDBLite consensus disorder prediction 100 120 - -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 144 168 - -
Tsu01g01993 263 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01993 Tsu-Chr1 20306817 20307934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01993 1 263 C2H2 Transcription Factor Family AT3G58070 38.652 3.66e-45 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01993 - - gmx:100806594 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01993 01 20306817 20307934 Tsu01g01993 01 20306817 20307934 ECH