Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01988 ATGGATCTAGGAGGCACTGGCAGTTCCTTCAAAGAAGTTCTTGAGTCTCACATGATGTTTTCAGATTTTGAGACATCTAGGTCTAAATCTGAGGCCAATTGTAATAGTACATTTGCAAAATCAAGGACTTGTTCAGATGGTAAGAATGCAAATCATTCAAAGAATGGTGTCGATGACCTACTTGAGTGCCCTGTTTGCAAGAATTTAATGTATCCCCCAATTCACCAGTGCCCAAATGGCCACACACTATGTTCCAATTGTAAGACTGTAGTACATAATCGTTGCCCAACATGTCATCGAGATCTTGGGAATATAAGGTGTTTGGCTTTAGAGAAAGTGGCAGAATCAATGGAGCTTCCATGCAGATATCAGAATCTGGGTTGTCAAGATATATTCTCATACCACTCTAAGTTAAAACATGAGCAAAATTGTCGATTTCGTCCATACAATTGCCCATATGCTGGATCAGAGTGCTCTATGATGTGTGACATTCCAACACTTATGACCCATCTCAAGGAGGATCACAAGGTCGACGTACATGACGGATTCACATTTAACCATCGATATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACTGTTTTCAATTGTTTTGGAAAGCATTTTTGCTTGCACTTCGAGGCATTTCTACTTGGCACATCTCCAGTTTATATGGCATTTTTACGATTTTTGGGTGATGAGAAAGAGGCAAAGAAATTCAGGTATAGCTTAGAGGTTGGTGCAAATAGCCGTAAACTAATATGGCAGGGAATTCCAAGGAGCATTCGCGAGAGTCATAGAAAAGTTCGTGACAGTCAAGATGGACTCATCATTCAAAGAAACCTAGCTCTTTATTTTTCAGGTGGTGATAAACAACAATTAAAGTTGAGGGTCACTGGTCGTATATGGAAAGAAgaatga 936 0.3942 MDLGGTGSSFKEVLESHMMFSDFETSRSKSEANCNSTFAKSRTCSDGKNANHSKNGVDDLLECPVCKNLMYPPIHQCPNGHTLCSNCKTVVHNRCPTCHRDLGNIRCLALEKVAESMELPCRYQNLGCQDIFSYHSKLKHEQNCRFRPYNCPYAGSECSMMCDIPTLMTHLKEDHKVDVHDGFTFNHRYVKSNPHEVENATWMLTVFNCFGKHFCLHFEAFLLGTSPVYMAFLRFLGDEKEAKKFRYSLEVGANSRKLIWQGIPRSIRESHRKVRDSQDGLIIQRNLALYFSGGDKQQLKLRVTGRIWKEE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01988 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 169 304 IPR008974 GO:0005515
Tsu01g01988 311 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu01g01988 311 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Tsu01g01988 311 SUPERFAMILY TRAF domain-like 119 308 - -
Tsu01g01988 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 168 IPR013083 -
Tsu01g01988 311 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Tsu01g01988 311 CDD RING-HC_SIAHs 61 98 - -
Tsu01g01988 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 106 IPR013083 -
Tsu01g01988 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 6 310 - -
Tsu01g01988 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 6 310 - -
Tsu01g01988 311 SUPERFAMILY RING/U-box 57 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01988 Tsu-Chr1 20222422 20225278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01988 7 311 C3H Transcription Factor Family AT2G41980 77.705 2.67e-177 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01988 K04506 - gmx:100813966 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01988 01 20222422 20225278 Tsu01g01988 01 20222422 20225278 ECH