Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01986 ATGGATTCTCAAAAACCAAACTCGAATCCTGCTTTACCTTCAACACCACCTGGTTTCAAAACTCCAATAGCAGATCTGAATCAAAAGCCTTGTGATGAAACAACTCAAACAAACCTAAACCATCAACAACAAACACTAACCAACAACAAAACCACCAACAATATGCACTCTGAGTTGCACCACATTGCTGAGCTTTTCCAAAGCAATTTCGGCTCTCGACAAATCCAAAACGAAGTTGTCAATGATCCAGATTCACGCGCCATCGTTCTGATTCCTGAGGTGCCGCGAAATGACAACACCACCAATAATGCTCCAACTGGTAAAGTCACGGCACAAAGACTTCAACGACACTTTAAGGGGCCAGTTCGTGTTCTAGTTCCCGATTTACCGGATCGGCAACAATTGCGTGCAATTGTAAGGAAAATAAGAATGGTATTTGATTCTTTTCGTCTTTTGTTTGTTGCGGAAGAAGAGAAGGGGGTCAATGTTCATACCGAAACAAGCGATCAAAGAGCTTTTGCTGTAATGAGGAGGCACGGTTTATGGTTGAATCATAATAAGAGGATCATTGGCACAATACCTGGTGTTTGCATTGGGGATATATTTGTTCATCGAACGGAATTGGCTATCGTTGGTTTACATGGTCAACAGGAAGCTGACATTGATTATCTACCTAGTAGTATGAGTTCGAAAGGCGAACCTATTGCTACTAGTGTGATTGTTTCTGGTGGATATGAGAATGATGATGATCAAGGGgcttttattatttattctgGTCATGGTGGTGAAGATAAGAATTCAAGGCAAGTTTTTCATCAGAAGTTAGAAGGTGGGAACCTTGCTATGGAGAGAAGTATGCATTATGGGATAGAAGTTAGGGTTATTCACAGTGTACAATATGAAGGTACTTCTTCTGTGTTTCATAaggtttatttttatgatgGTTTGTATAAGATAGTTAAATCTTGGATTGATGATAAATCTGGTTTTGATGTCTACAAGTTTAAGTTAAGGAGAATTGACAATCAAGCTAAGATAGATTGTGTTGATTTTAATCCTAGGTGTGTCTTATCTCTCGATATTTCTAACAAGGAAGAAAATGTCGGTATTAGGCTAgttaataatattgatgagaATCACGACCCTATCTATTTTGAGTATCTCCCGAGGGCTATTTTTCCTCCGTTTGTGTATCAGCATAGCGGGAGGGAAACAAGTTGTGGATGTATTGACGGCTGTATGGAAGGATGCTTCTGTTTCATAAAGAATGGAAATGAATTTCCATATAATCAAAACGGGATTCTCTGGAAAGGGAGGCCGTTAATTTTTGAATGCGGTCCTTTTTGCCGTTGTCCGCCTCATTGTCATAACCGTGTTACGCAAAAGGGTTTCAAACATAGGTTGGAAGTGTTTAGATCTAGGGACTCTGGTTGGGGAGTTAGGTCTTTAGACCTTATTCCAGCAGGCAGTTTCATATGTGAGTACACCGGGGTTGTTTTGACGGGGGagcaagaagaaattgttaCCATGAATGGTGATACATTGATATATCCCTATCGGTTTGCGAAAAGTTGGGCGGAATGGGGTAATTTATCTGTGATAGACCCTAGTTATAAACATCCATCCTATCCATTTATTCCTCCTTTAGAGTTTGCTATGGATGCGTCAAGAATGAGGAATGTTGCTTGCTATATAAGCCATAGTTCAATGCCCAATGTGATGGTTCAATTTGTTCATTTTGATCACAATAATTTGGAATTCCCTCACTCTATGCTATTTGCAATGGAGAACATCCCTCCATTGAGAGAGTTTACCCTTGATTATGGGGTACCTGATGGTGACTTGACTGTGGCTGACTAG 1860 0.3903 MDSQKPNSNPALPSTPPGFKTPIADLNQKPCDETTQTNLNHQQQTLTNNKTTNNMHSELHHIAELFQSNFGSRQIQNEVVNDPDSRAIVLIPEVPRNDNTTNNAPTGKVTAQRLQRHFKGPVRVLVPDLPDRQQLRAIVRKIRMVFDSFRLLFVAEEEKGVNVHTETSDQRAFAVMRRHGLWLNHNKRIIGTIPGVCIGDIFVHRTELAIVGLHGQQEADIDYLPSSMSSKGEPIATSVIVSGGYENDDDQGAFIIYSGHGGEDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIHSVQYEGTSSVFHKVYFYDGLYKIVKSWIDDKSGFDVYKFKLRRIDNQAKIDCVDFNPRCVLSLDISNKEENVGIRLVNNIDENHDPIYFEYLPRAIFPPFVYQHSGRETSCGCIDGCMEGCFCFIKNGNEFPYNQNGILWKGRPLIFECGPFCRCPPHCHNRVTQKGFKHRLEVFRSRDSGWGVRSLDLIPAGSFICEYTGVVLTGEQEEIVTMNGDTLIYPYRFAKSWAEWGNLSVIDPSYKHPSYPFIPPLEFAMDASRMRNVACYISHSSMPNVMVQFVHFDHNNLEFPHSMLFAMENIPPLREFTLDYGVPDGDLTVAD 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01986 619 Gene3D - 172 354 IPR036987 -
Tsu01g01986 619 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE FAMILY MEMBER SUVH2-RELATED 26 612 - -
Tsu01g01986 619 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 26 612 - -
Tsu01g01986 619 Pfam SAD/SRA domain 190 343 IPR003105 -
Tsu01g01986 619 SMART set_7 466 615 IPR001214 GO:0005515
Tsu01g01986 619 ProSiteProfiles Pre-SET domain profile. 405 463 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01986 619 SUPERFAMILY PUA domain-like 173 352 IPR015947 -
Tsu01g01986 619 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 57 618 IPR025794 GO:0016571
Tsu01g01986 619 Gene3D SET domain 355 617 IPR046341 -
Tsu01g01986 619 ProSiteProfiles SET domain profile. 466 609 IPR001214 GO:0005515
Tsu01g01986 619 Pfam SET domain 477 609 IPR001214 GO:0005515
Tsu01g01986 619 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g01986 619 SMART preset_2 358 450 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01986 619 SMART G9a_1 186 343 IPR003105 -
Tsu01g01986 619 SUPERFAMILY SET domain 351 610 IPR046341 -
Tsu01g01986 619 Pfam Pre-SET motif 361 458 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01986 619 ProSiteProfiles YDG domain profile. 191 339 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01986 Tsu-Chr1 20191712 20193571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01986 138 610 Su(var)3-9 homologs AT1G73100 37.120 1.07e-91 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g01986 SAD_SRA 6.5e-42 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01986 K11420 - gmx:100795514 726.857