Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01983 ATGGAACTTGCTTTGAGTTTAGGTGACACACCAAAATTacccttttcttttcttgacaAACCAACTAAAGATCCATTACCAAATTTGTTCTTAACACAACAAGGAAAACCCTCAGAGCTTGAAAAAACAAGTTCCTTAGATCCACCTATTCAACTTGACCTTCTTCCTTTCTCTCCTGTTCTTAGATCTCATCACTCTTCTTCTCACCTTCCCATTCCTTGGCTCACTCAACCATGTGGACCGGTGAGGGAGAGGGAGTTAGACGTGAACCGTTTTCCGGCGATGACGGAGGAGGCTGACGATGGCGCCTCACTGTCATCTCCCAGCAGTTCTGTGTCACCATTTCCAATGGATTTCAGTATGAGGAACAACAATGCTGAATATGGAGGAAGAAACAAGAGAGAAAATGAAGGTGAAGCTGAAAGAgttagtgatgatgatgaaaacgGGTCAACTCGGAAGAAACTCAGACTTTCTAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACTTTGAATCCAAAGCAAAAACTTGCACTGGCAAAACAGTTGAATCTAAGTCCTCGTCAGGTGGAAGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAAACAGAAGTGGATTGTGAATATTTGAAGAGATGTTGTGAGACATTAACAGAAGAGAATAGAAGGTTACAAAAAGAACTTCAAGAACTTAGAGCTTTGAAAACCAATCAACCATTTTACATGCAACTTCCAGCTACAACTCTAACTATGTGTCCTTCTTGTGAACGTGTAGCTACAAATCCTTGCAACAATCAAACCAACAACAAGGCTAAAACATTGCATTTCACTAATTCTCAACAAGCTCAACAACAGAAAGCCCAAGCCCATCAGATTCCTTCATGA 909 0.3883 MELALSLGDTPKLPFSFLDKPTKDPLPNLFLTQQGKPSELEKTSSLDPPIQLDLLPFSPVLRSHHSSSHLPIPWLTQPCGPVRERELDVNRFPAMTEEADDGASLSSPSSSVSPFPMDFSMRNNNAEYGGRNKRENEGEAERVSDDDENGSTRKKLRLSKDQSAFLEESFKEHTTLNPKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTNQPFYMQLPATTLTMCPSCERVATNPCNNQTNNKAKTLHFTNSQQAQQQKAQAHQIPS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01983 302 MobiDBLite consensus disorder prediction 27 45 - -
Tsu01g01983 302 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
Tsu01g01983 302 MobiDBLite consensus disorder prediction 128 156 - -
Tsu01g01983 302 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 38 297 - -
Tsu01g01983 302 Pfam Homeodomain 153 207 IPR001356 GO:0003677
Tsu01g01983 302 MobiDBLite consensus disorder prediction 1 47 - -
Tsu01g01983 302 MobiDBLite consensus disorder prediction 97 156 - -
Tsu01g01983 302 Coils Coil 215 245 - -
Tsu01g01983 302 CDD homeodomain 153 210 IPR001356 GO:0003677
Tsu01g01983 302 MobiDBLite consensus disorder prediction 102 120 - -
Tsu01g01983 302 SUPERFAMILY Homeodomain-like 146 210 IPR009057 -
Tsu01g01983 302 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Tsu01g01983 302 SMART halz 209 252 IPR003106 GO:0006355|GO:0043565
Tsu01g01983 302 PANTHER - 38 297 - -
Tsu01g01983 302 Gene3D - 157 207 - -
Tsu01g01983 302 SMART HOX_1 151 213 IPR001356 GO:0003677
Tsu01g01983 302 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01983 Tsu-Chr1 20163221 20165709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01983 49 277 Homeobox Transcription Factor Family AT5G47370 54.167 3.85e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu01g01983 Homeodomain 4.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01983 K09338 - gmx:100776113 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01983 01 20163221 20165709 Tsu01g01983 01 20163221 20165709 ECH
Tsu07g03492 07 41135183 41136906 Tsu01g01983 01 20163221 20165709 PCT