Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g01980 | ATGGGGGAACAAGCATCTGATCGAATTGCAATGGACATGGACACTGATTCGAATCTCCAACGGTATCAAGAACAATTATCAGTTGCCATTTCTAATATTGGTGCTTTGAATTTGAATGATTCAATTCATCATCGTGGTAGTAATCTATATAATCATGATACATGGGAAAGTGTTTTGAATTATCCTCGCAATCGAAAAGCCGATGAAGTCCCAAAAGCTAGTGAATCTGGTGCTGCTGCATTGAATAAGAGTATTGATAATGGAAGTGTTTATGATTGTAATATTTGTTTAGATTTGGCTAAGGAACCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGGTGGTTGAATTTAAGATCTTCTCGAATTCGGACTAAAGAATGTCCGGTTTGCAAGGGTGAAGTTACTGATAAGGATGTTATTCCTATATATGGTGTTGGGAATAGTGATGAGATTCGTAATGAGGATTCAAGCTCCACAACGCCTCAAATTCCTCGAAGACCTAATGCAAGGCGTGTCTCGAGGGATCTTAATGCAAGGCCTGTCTTGGGGGACTCGTGGAATTTTAATGCAAGGCATGTCTCGAGGGATCTTAATGCAAGGCCTGTCTTTGGGGACTATAGGGATCTTAATGCAAGGCTTGTCTCGAGGAATCCTAATGCAACGCCTTACCCGTTGGATCTTAATGTGATGCAAACGGCGATCCACCAACCAGGACTGGGCCTCGATATTTCCAATCTTTATGGGGCCTTTCAATTTGCCAACCagtga | 786 | 0.4122 | MGEQASDRIAMDMDTDSNLQRYQEQLSVAISNIGALNLNDSIHHRGSNLYNHDTWESVLNYPRNRKADEVPKASESGAAALNKSIDNGSVYDCNICLDLAKEPVVTCCGHLFCWPCIYRWLNLRSSRIRTKECPVCKGEVTDKDVIPIYGVGNSDEIRNEDSSSTTPQIPRRPNARRVSRDLNARPVLGDSWNFNARHVSRDLNARPVFGDYRDLNARLVSRNPNATPYPLDLNVMQTAIHQPGLGLDISNLYGAFQFANQ | 261 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g01980 | 261 | MobiDBLite | consensus disorder prediction | 156 | 177 | - | - | |
Tsu01g01980 | 261 | MobiDBLite | consensus disorder prediction | 156 | 172 | - | - | |
Tsu01g01980 | 261 | CDD | RING-HC_AtRMA_like | 91 | 138 | - | - | |
Tsu01g01980 | 261 | PANTHER | OS01G0830200 PROTEIN | 61 | 218 | - | - | |
Tsu01g01980 | 261 | ProSiteProfiles | Zinc finger RING-type profile. | 93 | 137 | IPR001841 | - | |
Tsu01g01980 | 261 | Pfam | RING-type zinc-finger | 93 | 134 | IPR027370 | - | |
Tsu01g01980 | 261 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 201 | IPR013083 | - | |
Tsu01g01980 | 261 | SUPERFAMILY | RING/U-box | 90 | 151 | - | - | |
Tsu01g01980 | 261 | SMART | ring_2 | 93 | 136 | IPR001841 | - | |
Tsu01g01980 | 261 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 61 | 218 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Tsu01g01980 | 261 | ProSitePatterns | Zinc finger RING-type signature. | 108 | 117 | IPR017907 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g01980 | Tsu-Chr1 | 20144456 | 20145241 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g01980 | 77 | 178 | C3H Transcription Factor Family | AT3G58030 | 52.294 | 7.07e-34 | 125 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g01980 | K10666 | - | dcr:108223586 | 136.732 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu01g01980 | 01 | 20144456 | 20145241 | Tsu01g01980 | 01 | 20144456 | 20145241 | ECH |