Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01980 ATGGGGGAACAAGCATCTGATCGAATTGCAATGGACATGGACACTGATTCGAATCTCCAACGGTATCAAGAACAATTATCAGTTGCCATTTCTAATATTGGTGCTTTGAATTTGAATGATTCAATTCATCATCGTGGTAGTAATCTATATAATCATGATACATGGGAAAGTGTTTTGAATTATCCTCGCAATCGAAAAGCCGATGAAGTCCCAAAAGCTAGTGAATCTGGTGCTGCTGCATTGAATAAGAGTATTGATAATGGAAGTGTTTATGATTGTAATATTTGTTTAGATTTGGCTAAGGAACCTGTTGTGACTTGTTGTGGTCATTTGTTTTGTTGGCCATGCATATATAGGTGGTTGAATTTAAGATCTTCTCGAATTCGGACTAAAGAATGTCCGGTTTGCAAGGGTGAAGTTACTGATAAGGATGTTATTCCTATATATGGTGTTGGGAATAGTGATGAGATTCGTAATGAGGATTCAAGCTCCACAACGCCTCAAATTCCTCGAAGACCTAATGCAAGGCGTGTCTCGAGGGATCTTAATGCAAGGCCTGTCTTGGGGGACTCGTGGAATTTTAATGCAAGGCATGTCTCGAGGGATCTTAATGCAAGGCCTGTCTTTGGGGACTATAGGGATCTTAATGCAAGGCTTGTCTCGAGGAATCCTAATGCAACGCCTTACCCGTTGGATCTTAATGTGATGCAAACGGCGATCCACCAACCAGGACTGGGCCTCGATATTTCCAATCTTTATGGGGCCTTTCAATTTGCCAACCagtga 786 0.4122 MGEQASDRIAMDMDTDSNLQRYQEQLSVAISNIGALNLNDSIHHRGSNLYNHDTWESVLNYPRNRKADEVPKASESGAAALNKSIDNGSVYDCNICLDLAKEPVVTCCGHLFCWPCIYRWLNLRSSRIRTKECPVCKGEVTDKDVIPIYGVGNSDEIRNEDSSSTTPQIPRRPNARRVSRDLNARPVLGDSWNFNARHVSRDLNARPVFGDYRDLNARLVSRNPNATPYPLDLNVMQTAIHQPGLGLDISNLYGAFQFANQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01980 261 MobiDBLite consensus disorder prediction 156 177 - -
Tsu01g01980 261 MobiDBLite consensus disorder prediction 156 172 - -
Tsu01g01980 261 CDD RING-HC_AtRMA_like 91 138 - -
Tsu01g01980 261 PANTHER OS01G0830200 PROTEIN 61 218 - -
Tsu01g01980 261 ProSiteProfiles Zinc finger RING-type profile. 93 137 IPR001841 -
Tsu01g01980 261 Pfam RING-type zinc-finger 93 134 IPR027370 -
Tsu01g01980 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 201 IPR013083 -
Tsu01g01980 261 SUPERFAMILY RING/U-box 90 151 - -
Tsu01g01980 261 SMART ring_2 93 136 IPR001841 -
Tsu01g01980 261 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 61 218 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu01g01980 261 ProSitePatterns Zinc finger RING-type signature. 108 117 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01980 Tsu-Chr1 20144456 20145241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01980 77 178 C3H Transcription Factor Family AT3G58030 52.294 7.07e-34 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01980 K10666 - dcr:108223586 136.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01980 01 20144456 20145241 Tsu01g01980 01 20144456 20145241 ECH