Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01971 ATGAGGTTCATTTCTTTGCtattcaaatatcaattattaGCACTCATAATCACTTTCATAGTCTTTACCAAAGTTAGCTCCTTGAATTTCAATTTCTCAACCTTTCAACCTAACGATGCAATCAagtttttactaaataataacTCATATATACAACATGAAGCCATACAAGTAACCCCTGATAACCGTCAAAGTTCAATATCCAATTTATCAGGACGTGCTTGTTACAATGTTCCATTCAAAATTGCTCCCTTCAACACCACTTTTGTTCTCAACATAAGTCCTCAAACTTCTCCTGGTGGAGAAGGCATAGCTTTTATCATAGCTTTAGATCCAACTCTCCCTAAAAACAGTTCAGGACAATGGCTTGGTATTGTAAATGCTTCCACTAATGGAACTTCGGAAGCCGCAATTGTTGCAGTTGAGTTTGATACACGACAGAGTTCAACCGAAGACGGTCCTGACAACCATGTTGGAATTAATATCAATAGCATCTCCTCTTTGGTACAATCATCATTATCAAACACTAAGGTGAATCTTTCATCTGGTTTAGATGTTTTTATAAGAATTGAATATTCTAATGATGTGATATCTGTTTTTGGTTCAATGATTGGAAATTCAAAGGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCCTATTTTAAACAAGAGGTTTATGTTGGTTTCTCTGGTTCAACAAGCAATTACACAGAGCTTAATTGTGTGAGAGCATGGGAATTCAATGGTGTAGATATTgtGATTGAAGAAGATGCATATGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAACGGAATTGATGAAAGCAACAGGCGGATTTAGCAATCAGAACAAACTTGGTGAAGGTGGATTTGGACCGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGATAGCCGTGAAGAGAGTCTCGAAGAACTCCCGTCAAGGAAAGCAAGAATTTATGGCAGAAGTTACAACAATTGGAAGCCTACACCACAAAAACTTAGTGAAACTCGTTGGCTGGTGCTATGAAAGCAAAGAGCTTCTGCTCATTTACGAGTTCATGCCTAAAGGAAGCTTAGACAAATACCTATTTAACCAATCAAGTGAATTAGAATTACAATATTCAAAAGTACTTGATTGGAAAACTAGGAATAGCGTGATTCGTGATGTAGCGCAAGCATTGGATTATCTTCATAATGGTTGTGAAAGAAGGGTACTTCATAGGGATATTAAAGCAAGCAACATAATGTTGGACTTAGATTATGTCGCTAAACTTGCGCGTACAGTTCAAAAGAGAAATGAAACTCATCACTCCACAAAGGAAATTGCGGGGACGCCAGGTTATATGGCGCCAGAGACTTCTCTAACTGGACGAGCAACGGTCGAGACAGATGTGTATGCATTTGGTGTACTTGTTTTAGAAGTTGTGTGTGGGAGAAGACCAGGAAATGTGTTTGCACAAGAGGATTATAAAAATAGTATTGTGTATCAAGTTTGGGAGCTTTATGGAAAAGGTGAAATTGTTAGTGTTGTGGATAAAAGGATAAGTTGTGAAGAGGATGAGGATGAGAGGGTAAAATGggaagaagaaattgaaattgtgCTTGTTCTTGGTTTGGCATGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTAATGGTTTTAAATGGAGAAGCTTCTCCTCCAATTGTTCCAATGGAAAGGCCTTCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATTAATGGATCACTCAACCAGATTAGCACTTTACCACTTATTCACTTCTTATCCATTCGGAGTATTCATCTTCATTTTGGTCGTTTCGAGAATGCCAAAGAGGTATGGGATCATTTAAAACAACGTTATACTATTTCTGATTTATCTCATCAATATCAATTGTTAAAGGATCTTAGTAATTTGAAACAACAATCTGGTCAAcctgtttatgagtttttagcACAGATGGAAATTATTTGGAATCAGTTAGCGTCATGTGAGTCTTCCCCAAAAGATGTTACTGACCTAAAAATATATGAGACTCATCGTAACTGTATTCGCCTTATTCAGTTTCTGATGGCTCTCACCGATGATTATGAACCTGTCCGAGCTTCCTTGTTGCACCAAAACCCTTTGCCTACACTAGAGAATGCTCTTCCATGTCTCAAGTCTGAAGAAACAAGATTGGGGCTTGTTCGCCAACAAGTTGATCATGCATTTGCAGTCACAAATAAGCCTACCAAATTTTGTTGTCGTTGTCATAAGTCTGATCATTCTTTTTCTGATTGTCCATTGGTTGAATGTCATAACTGCAATAAAAAGGGTCATATTGCTTCAAATTGTTGTCGATATTGCAAGACACCCGGACACTTGATTCAGAATTGGCCCACTCGTCCTCCACGTTCTGATCAGAATAGAAATCAACCTCGTTCCAACTCTTCAAGGCCTGCACTTGCTACTGCTGCTACCACCAATGTATCTGTAGAGTCCTCTCAGCCAGCGTTCTCTGTCACAGATCTTGAGTCTCTTCTTAGACAACTTCTTTCTTCCGGTAATACTCCTGCTGCTCTGTCCACCACACCAGATAATTCAAAATGGTATTTAGACTCTGCCTGTTGTAATCACATGACATCTACATCTCACTTATTTTCTTCCCTATCTGAGAATAACACTACTCAATCTATTCACACTGCTGATGGATCTCTTATGCTTGTAACCCATAAAGGTTCTATCTCATTGTATAATTTAAGCTTACCCGACACATATCTAATTCCTAAATTAAGTTTTAACCTTATCTCTGTTGGCCAATTATGTGATCTTTGTTATGAACTTACATTCTCTTCCTCTAGATGTCGTGTGCAGGATCCACGGACGGGACAACTCATAGGGACTGATGTAAGACCGGAAGGCTTTTTGAGCTCACTAAACTGCATGTTCCTCAAGTGCCTAACATATGTGCCGCTTCCAAAGATTCTTCCATTCGACTTTGGCACTATCGTCTTGCTCATAGCTCTATTGGAAAAATGCATCATCTTGTGTCTCAAGTTAAGGTTTTTCGTCGAGATCATGCAATGGAATATCGTGATTCCAAACTCTTATCTTTTCTTCATGAGCAAGCCCCATGAATATACTAAACTTGAGCCTCGTGCTCGTCTATGTTGTTTTCTTGGTTATGGGGCTGAACACAAAGGCTATCGATGTTGGGACCCAATATTCCAACGCAATCGTGTCTCTCGTCATGTTGTCTTTTGGGAACATATAATGTTTTCTTCCTTGTCAAGGTTTAAGTCAATCCCCTCTACTTCAACTCCTCTCTTCACTAACCCTGATTTCGATTATTTTCCTAGTGACACAATTGCAGGTTCTGAGACGCATGTAGGTTCATCTAGTGAGATTCCGACGCCTTCCGATATTCCATCCACTTCTAGTGATGATGTTTCGTCTGTTGATCCTGCACCGCCCACTGTTGAGCTTCCTACACGGGTAAGAAATCCACCTCCATACCTTCGTGATAATTACCATTGCTATTCCACTATGCTTCACTATCATGAACCACAGTCCTATAAGGAAGCCTATGCAGATCCTCATTGGCAGCAAGCTATGCAGGAAGAATTACACGCATTGGAGAAAACTCACACATGGGATCTTGTTGATCCTCCTTCTAATAAGACTCTTGTGGGATGCAAGTGGGTGTATAAAATAAAGACTCTTTCTGATGGAACTATCGAGCCTTACAAAGCTCGTCTTGTGGCAAAAGGGTTTACTCAAGAATATGGTATTGATTATGAGGAAACATTTGCCCATGTTGCACGTATTACCTCTGTTCGAACTCTTCTTGTTATTGCTGCCACTCGCCAATGGAAACTCactcaaatggatgttaaaaatgCTTTCCTCAATGGCGAGTTAGAAGAAGAGGTTTACATGCATCCTCCCCAGGATATAACTGTCAGGAAAACAAAGACTATCACCCAATTGAATTTCTACTCGAGTGCTCATGATTCTGCTCTTCTTACTCGGAAAACTGACAATGGCACTGTTTTATTGCTtctttatgttgatgacatgaTTATCACCGGTGATGACTCATTTGGCATTGAAGATATCAAGAAATTCTTGTGTCAACATTTTGATATGAAGGATCTTGGACTGTTAAGTTATTTTTTGGGGCTTGGAGTATTATCTTCAAGTGATGGTTTGTTTATGTCACGGGCTAAGTATGCCTCCGATCTCACCTCTCGAGCAGGTCTCactgattttaaaattgaacaGACTCCTCTCGAACCCAACATTCGATTTACTCCTCAAGACGGTACCTTGCTTGATGATGTTCTCACAATGATGTTTTCCATGAatgaaccaaacatattgaaattgattgtCACTTTATTCGTCAACATCTTATTCGTGGTGAATTTCATCTTATCTCCATTGGCACTCTTGACCAGCCGGCTGATTTGTTCACAAAACCTCATTCACCCGGTCGCTTCCGCACTTTAG 4581 0.3835 MRFISLLFKYQLLALIITFIVFTKVSSLNFNFSTFQPNDAIKFLLNNNSYIQHEAIQVTPDNRQSSISNLSGRACYNVPFKIAPFNTTFVLNISPQTSPGGEGIAFIIALDPTLPKNSSGQWLGIVNASTNGTSEAAIVAVEFDTRQSSTEDGPDNHVGININSISSLVQSSLSNTKVNLSSGLDVFIRIEYSNDVISVFGSMIGNSKDSMETLLVSPPLNLSSYFKQEVYVGFSGSTSNYTELNCVRAWEFNGVDIVIEEDAYGGIEDQIQHSSMAPKKYQLTELMKATGGFSNQNKLGEGGFGPVYKGILGNNKEIAVKRVSKNSRQGKQEFMAEVTTIGSLHHKNLVKLVGWCYESKELLLIYEFMPKGSLDKYLFNQSSELELQYSKVLDWKTRNSVIRDVAQALDYLHNGCERRVLHRDIKASNIMLDLDYVAKLARTVQKRNETHHSTKEIAGTPGYMAPETSLTGRATVETDVYAFGVLVLEVVCGRRPGNVFAQEDYKNSIVYQVWELYGKGEIVSVVDKRISCEEDEDERVKWEEEIEIVLVLGLACCHPNPNERPSMKTVLMVLNGEASPPIVPMERPSFVWPAMPSSFKEGEDNSLINGSLNQISTLPLIHFLSIRSIHLHFGRFENAKEVWDHLKQRYTISDLSHQYQLLKDLSNLKQQSGQPVYEFLAQMEIIWNQLASCESSPKDVTDLKIYETHRNCIRLIQFLMALTDDYEPVRASLLHQNPLPTLENALPCLKSEETRLGLVRQQVDHAFAVTNKPTKFCCRCHKSDHSFSDCPLVECHNCNKKGHIASNCCRYCKTPGHLIQNWPTRPPRSDQNRNQPRSNSSRPALATAATTNVSVESSQPAFSVTDLESLLRQLLSSGNTPAALSTTPDNSKWYLDSACCNHMTSTSHLFSSLSENNTTQSIHTADGSLMLVTHKGSISLYNLSLPDTYLIPKLSFNLISVGQLCDLCYELTFSSSRCRVQDPRTGQLIGTDVRPEGFLSSLNCMFLKCLTYVPLPKILPFDFGTIVLLIALLEKCIILCLKLRFFVEIMQWNIVIPNSYLFFMSKPHEYTKLEPRARLCCFLGYGAEHKGYRCWDPIFQRNRVSRHVVFWEHIMFSSLSRFKSIPSTSTPLFTNPDFDYFPSDTIAGSETHVGSSSEIPTPSDIPSTSSDDVSSVDPAPPTVELPTRVRNPPPYLRDNYHCYSTMLHYHEPQSYKEAYADPHWQQAMQEELHALEKTHTWDLVDPPSNKTLVGCKWVYKIKTLSDGTIEPYKARLVAKGFTQEYGIDYEETFAHVARITSVRTLLVIAATRQWKLTQMDVKNAFLNGELEEEVYMHPPQDITVRKTKTITQLNFYSSAHDSALLTRKTDNGTVLLLLYVDDMIITGDDSFGIEDIKKFLCQHFDMKDLGLLSYFLGLGVLSSSDGLFMSRAKYASDLTSRAGLTDFKIEQTPLEPNIRFTPQDGTLLDDVLTMMFSMNEPNILKLIVTLFVNILFVVNFILSPLALLTSRLICSQNLIHPVASAL 1526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01971 1526 SMART c2hcfinal6 776 792 IPR001878 GO:0003676|GO:0008270
Tsu01g01971 1526 SMART c2hcfinal6 794 810 IPR001878 GO:0003676|GO:0008270
Tsu01g01971 1526 PANTHER - 265 611 - -
Tsu01g01971 1526 Gene3D Transferase(Phosphotransferase) domain 1 369 580 - -
Tsu01g01971 1526 SUPERFAMILY Protein kinase-like (PK-like) 275 574 IPR011009 -
Tsu01g01971 1526 CDD lectin_legume_LecRK_Arcelin_ConA 28 253 IPR001220 GO:0030246
Tsu01g01971 1526 Gene3D - 25 259 - -
Tsu01g01971 1526 PANTHER - 12 257 - -
Tsu01g01971 1526 MobiDBLite consensus disorder prediction 1150 1176 - -
Tsu01g01971 1526 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1239 1342 IPR013103 -
Tsu01g01971 1526 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1347 1454 IPR013103 -
Tsu01g01971 1526 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 257 - -
Tsu01g01971 1526 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 265 611 - -
Tsu01g01971 1526 SUPERFAMILY DNA/RNA polymerases 1238 1435 IPR043502 -
Tsu01g01971 1526 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 253 IPR013320 -
Tsu01g01971 1526 Pfam gag-polypeptide of LTR copia-type 633 755 - -
Tsu01g01971 1526 ProSiteProfiles Protein kinase domain profile. 293 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01971 1526 MobiDBLite consensus disorder prediction 820 853 - -
Tsu01g01971 1526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Tsu01g01971 1526 Pfam Protein kinase domain 294 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01971 1526 Pfam Legume lectin domain 27 254 IPR001220 GO:0030246
Tsu01g01971 1526 SMART serkin_6 293 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01971 1526 ProSiteProfiles Zinc finger CCHC-type profile. 795 808 IPR001878 GO:0003676|GO:0008270
Tsu01g01971 1526 CDD STKc_IRAK 299 576 - -
Tsu01g01971 1526 Gene3D Phosphorylase Kinase; domain 1 267 368 - -
Tsu01g01971 1526 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Tsu01g01971 1526 MobiDBLite consensus disorder prediction 824 853 - -
Tsu01g01971 1526 MobiDBLite consensus disorder prediction 1150 1192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01971 Tsu-Chr1 20024860 20031720 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01971 82 586 Receptor kinase-like Gene Family AT3G53810 36.861 1.28e-95 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g01971 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01971 - - gmx:100790353 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01971 01 20024860 20031720 Tsu01g01971 01 20024860 20031720 ECH