Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01968 ATGAGGTTCATATCTTTGCTACTCAAATATCAATTATTAGCACTCATATTCACTTTCATAGCCTTAACCAAAGTTAGTTCCTTGAATTTCAGTTTCTCAACCTTTCAACCAAACGATGTAAACAGATTGTTACTTGATAAGTCATATATACAACAAGGTGCCATACAAGTAACCCCTGATAATAGTAAAACTTCAATATCTAATTTCTCAGGACGTGCTTTATACAAAGATTCATTCATAATTGCTTCCTTCAACACCACTTTTGTTCTCAATATAAGTCCTGAAACTTCCCCTGCTGGAGAAGGAATGGCTTTTATCTTAGCTTTAGATGCAACTCTTCCTGAAAATAGTTCAGGAGAATGGCTTGGTATTGTTAATGCTTCCACTAATGGAACTTCTCGAGCCGCAATTCTTGCAGTTGAGTTTGATACACGACATAGTTCAACCGAAGATGGTCCTGACAACCATGTTGGAATCAATATAAACAGCATATCCTCCTTGAAACAAGAATCATTATCAAACACTAAGGTGAATATTTCATCTGGTTTAGATGTATTCATAAGAATTGAATATTCTAATGATGTGATATCTGTTTTTGGTTCAATGACTGAAAATTCAAATGATTCTATGGAGATCCTTTTGGTATCTCAACCTCTTAATCTCTCATCCTATTTTAAACAAGAGGTTTACGTCGGTTTCTCTGCTTCAACAAGTAATTACACAGAGCTAAACTGTGTAAAAGCATGGGAATTCAATGGTGTAGATATTGGTGATAAAAAGAATTACTTGTGGATTTGGATTATAGTTCCAATAGTATTATTGATGATAATCTTAGGTGGATTAGTCTTTTTCTTCCTTTACTTtcgaaggaaaaaaaacatagaGATTGAAGAAGATGCATATGGAGGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAACAGAATTGATGAAAGCAACATGTGGATTCAGCCATCAGAACAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGAAGTACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTTACAACGATTGGAAGTCTTCACCACAAAAACTTGGTGAAACTCATCGGTTGGTGCTACGAAAGCAATGAGCTTCTCCTTGTTTACGAGTTCATGCCAAACGGTAGcttagacaaatacatatttaacCAATCATGTGAATTAGAATTACAATATTCAAAAGTACTTGATTGGAAAACTAGAAATCGCGTGATTCGAGACATTGCCCAAGCATTGGATTATCTTCACAATGGATGCGAAAAAAGAGTACTTCATAGAGACGTTAAAGCAAGCAACATAATGTTGGATGTAGACTACATTGCAAAATTGGGTGATTTTGGATTGGCGCGTACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCTGGGACACCAGGTTATATGGCACCCGAAACTTTTTTAACCGGAAGAGCAACGGTTGAAACAGATGTTTATGCATTTGGTGTTCTTATTTTGGAAGTTGTGTGTGGAAGAACACCCGAAAATGTGTATGCACAAGATGATTATAAAAATAGTATTGTGTATTGGGTTTGGGAGCTTTATGGAAAAGGAGAAATTGTTAGTGCTGTGGATAAAAGGATAAATTATGAAGAAAATGAGAGGGTAAAATGGGAAGAAGTTGAAATTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAACACTGTTTTAATGGTTCTAAATGGAGAAGCTTCTCCTCCAAATGTTCCATTGGAAAGACCTGCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAACATGGTGAAGATAATTCTCTTATTAATGGAACTCTCACTCCATTGTCTCAACTTAGTGGCAGATAG 1983 0.355 MRFISLLLKYQLLALIFTFIALTKVSSLNFSFSTFQPNDVNRLLLDKSYIQQGAIQVTPDNSKTSISNFSGRALYKDSFIIASFNTTFVLNISPETSPAGEGMAFILALDATLPENSSGEWLGIVNASTNGTSRAAILAVEFDTRHSSTEDGPDNHVGININSISSLKQESLSNTKVNISSGLDVFIRIEYSNDVISVFGSMTENSNDSMEILLVSQPLNLSSYFKQEVYVGFSASTSNYTELNCVKAWEFNGVDIGDKKNYLWIWIIVPIVLLMIILGGLVFFFLYFRRKKNIEIEEDAYGGIEDQIQHSSMAPKKYQLTELMKATCGFSHQNKLGEGGFGTVYKGILGNNKEIAVKRVSKYSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYESNELLLVYEFMPNGSLDKYIFNQSCELELQYSKVLDWKTRNRVIRDIAQALDYLHNGCEKRVLHRDVKASNIMLDVDYIAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLILEVVCGRTPENVYAQDDYKNSIVYWVWELYGKGEIVSAVDKRINYEENERVKWEEVEIVLVLGLACCHPNPNERPSMNTVLMVLNGEASPPNVPLERPAFVWPAMPSSFKHGEDNSLINGTLTPLSQLSGR 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01968 660 Pfam Legume lectin domain 27 256 IPR001220 GO:0030246
Tsu01g01968 660 SMART serkin_6 330 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01968 660 Gene3D Phosphorylase Kinase; domain 1 295 405 - -
Tsu01g01968 660 SUPERFAMILY Protein kinase-like (PK-like) 312 613 IPR011009 -
Tsu01g01968 660 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 252 IPR013320 -
Tsu01g01968 660 Pfam Protein kinase domain 331 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01968 660 Gene3D Transferase(Phosphotransferase) domain 1 406 619 - -
Tsu01g01968 660 PANTHER - 12 651 - -
Tsu01g01968 660 CDD STKc_IRAK 336 615 - -
Tsu01g01968 660 ProSiteProfiles Protein kinase domain profile. 330 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01968 660 CDD lectin_legume_LecRK_Arcelin_ConA 28 252 IPR001220 GO:0030246
Tsu01g01968 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Tsu01g01968 660 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 12 651 - -
Tsu01g01968 660 ProSitePatterns Protein kinases ATP-binding region signature. 336 358 IPR017441 GO:0005524
Tsu01g01968 660 Gene3D - 25 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01968 Tsu-Chr1 19961686 19963668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01968 8 629 Receptor kinase-like Gene Family AT5G55830 36.337 1.27e-120 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g01968 Pkinase 5.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01968 - - gmx:100790353 894.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01968 01 19961686 19963668 Tsu01g01968 01 19961686 19963668 ECH