Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01967 ATGATGTTCATGTCATTGCtattcaaatatcaattattaGCATTAATAATCACTTTCATATCCATTACCAAAGTTAGCTCCTTGAATTTCAGTTTCCCAACCTTCCAACAAAAAGATGAAGCCAAATTGATACGAAGCAACAATACATATATACAACAAAGTGCTATCCAAGTAACCCCGGATTATAGTAAAGTTTCAATGTCCAATTTATCAGGACGTGCTTTATACAAAGATCCATTCAAAATTGCTTCCTTCAACACCACTTTTGCTATCAATATAACTCCTGAAACTTCCCCTGGTGGAGAAGGaatagcttttattttagcttcAGATCCAACTCTCCCTGAAAACAGTTCTGGACATTGGCTTGGTATTGTAAATGCTTCCACCAATGGAACTTCTCGAGCTGCTATTCTTGCAGTTGAGTTTGATACACGACATAGTTCAACCGAAGATGGTCCTGATAACCATGTCGGAATCAACATAAATAGTATCTCCTCAATCATACAAGCATCATTATCAGACACTAAACTGAATCTTTCATCTGCTACAAATGTATTTATAAGAATTGAATATTCTAATGATGTCATATCTGTTTTTGGTTCAATGACTCAAAATTCAAAGGATTCTATGGAGACCCTTTTGGTATCTCCACCTCTTAATCTCTCTTCCTATTTTAAACAAGAGGTTTACGTCGGTTTCTCTGCTTCAACAAGCAATTACACAGAGCTAAACTGTTTGAGAGCATGGGAATTCAATAGTGTAGATattggtaataaaaaaaatctcttgtGGATTTGGATTATAATTCCATTGGTCATAATCATAGGTGGATTGGTCTTTTTCTTCCTTtattttcaaaggaaaaaaatcatGGAGCTTCAAGAAGATATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGCAATTGATGAAAGTAACAGGTGGATTCAGCCCTCAGAATAAACTTGGCGAAGGTGGTTTTGGAATGGTTTATAAGGGTATTCTTGGAAACAAAAAAGAGATAGCTGTGAAGAGAGTTTCGAAGAACTCGCGCCAAGGAAAACAAGAATTTATGGCAGAAATTACAACAATTGGAAGCCTGCATCACAAAAACTTAGTGAAACTCATTGGTTGGTGCTACGAAAGCAAAGAGCTTCTCCTTGTTTACGAGTTTATGCCAAAAGGAAGTTTGGATAAATACTTATTTAACCAATCAAGTGAATTAGAAGTACAATATTCAAAAGTACTTGATTGGCAAACAAGAAATAGCGTGGTTCGTGATGTCGCCCAAGCATTGGATTATCTTCACAATGGATGTGAGAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATGTTGGATTTAGATTACGTTGCAAAATTGGGTGATTTTGGATTGGCGCGTACAATCCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCTGGAACACCAGGTTATATGGCACCCGAAACTTTTTTAATCGGAAGAGCAACGGTTGAAACAGATGTGTATGCATTTGGTGTTCTTGTTTTGGAAGTTGTGTGTGGAAGAAGACCAGGAAATGTGTACGCACacgatgattataataatagtaTTGTGTATTGGGTTTGGGAGCTTTATGGAAAAggcgaaattgttagtgtcgtgGATAAAAGGATAAGTTATGAAGAGAATGAAGTTGAGAGGGTAAAGTGGGAAGAAGTTGAAACTGTGCTTGTTCTTGGTTTGGCTTGTTGTCATCCAAATCCAAATGAAAGGCCATCAATGAAAACTGTTTTGATGGTTCTAAATGGTGAAGTTTCTCCTCCAAATGTTCCATTGGAAAGACCTTCTTTTGTTTGGCCTGCTATGCCTTCATGTTTCAATCATGGTGAAACTCAAGATAGCTCTCTTCTCAGTGGAACTCTTACTCCAATCACTCAACTTAGTGGCAGATAG 1977 0.3495 MMFMSLLFKYQLLALIITFISITKVSSLNFSFPTFQQKDEAKLIRSNNTYIQQSAIQVTPDYSKVSMSNLSGRALYKDPFKIASFNTTFAINITPETSPGGEGIAFILASDPTLPENSSGHWLGIVNASTNGTSRAAILAVEFDTRHSSTEDGPDNHVGININSISSIIQASLSDTKLNLSSATNVFIRIEYSNDVISVFGSMTQNSKDSMETLLVSPPLNLSSYFKQEVYVGFSASTSNYTELNCLRAWEFNSVDIGNKKNLLWIWIIIPLVIIIGGLVFFFLYFQRKKIMELQEDIEDQIQHSSMAPKKYQLKQLMKVTGGFSPQNKLGEGGFGMVYKGILGNKKEIAVKRVSKNSRQGKQEFMAEITTIGSLHHKNLVKLIGWCYESKELLLVYEFMPKGSLDKYLFNQSSELEVQYSKVLDWQTRNSVVRDVAQALDYLHNGCEKRVLHRDIKASNIMLDLDYVAKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLIGRATVETDVYAFGVLVLEVVCGRRPGNVYAHDDYNNSIVYWVWELYGKGEIVSVVDKRISYEENEVERVKWEEVETVLVLGLACCHPNPNERPSMKTVLMVLNGEVSPPNVPLERPSFVWPAMPSCFNHGETQDSSLLSGTLTPITQLSGR 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01967 658 Gene3D - 25 263 - -
Tsu01g01967 658 SUPERFAMILY Concanavalin A-like lectins/glucanases 26 262 IPR013320 -
Tsu01g01967 658 Pfam Protein tyrosine and serine/threonine kinase 327 607 IPR001245 GO:0004672|GO:0006468
Tsu01g01967 658 CDD STKc_IRAK 330 611 - -
Tsu01g01967 658 Pfam Legume lectin domain 27 261 IPR001220 GO:0030246
Tsu01g01967 658 Gene3D Transferase(Phosphotransferase) domain 1 400 615 - -
Tsu01g01967 658 CDD lectin_legume_LecRK_Arcelin_ConA 28 254 IPR001220 GO:0030246
Tsu01g01967 658 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 17 641 - -
Tsu01g01967 658 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Tsu01g01967 658 PANTHER - 17 641 - -
Tsu01g01967 658 ProSiteProfiles Protein kinase domain profile. 324 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01967 658 Gene3D Phosphorylase Kinase; domain 1 298 399 - -
Tsu01g01967 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Tsu01g01967 658 SUPERFAMILY Protein kinase-like (PK-like) 306 609 IPR011009 -
Tsu01g01967 658 SMART serkin_6 324 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01967 Tsu-Chr1 19956243 19958735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01967 11 625 Receptor kinase-like Gene Family AT5G55830 35.565 4.56e-119 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g01967 PK_Tyr_Ser-Thr 8.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01967 - - gmx:100790353 887.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01967 01 19956243 19958735 Tsu01g01967 01 19956243 19958735 ECH