LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01966	ATGGTTAACAACAGATTCATAATGCTTGCCACACAAGCAACAACAAGATCCCATAATCTCATTCCTTTCTTCCTCAAACTATCATCAATAGTCACTACATTATGGAAAATGCTCCATATAAGTGATGACTTGGTAGGAGGGATTGATTTGCGAAGCATCGTTATAATCAAGCTGTCCAGATTTAGAGTGATCACAAACTCTAGTGTCAGGAATAGAACTAGATGGGATAGTCACTCATatgCTATGAGGTTAATCGGTAGAAAGTTTAGTGATTCTGTTGTTCAAAATGATATGGTGTTGTGGCCATTCAAGGTGGTTGGGGTGAATGACGACAAACCCATGATTGTTGTTAATTACAAGGGTGAAGAGAAGCACTTTTGTGCTGAGTTTACGGGCCCTGTGCTGCTGTTAAAAGCGCCTGGTGTTGCAGCTATGTTCCGGTGTTTTGATGTGCTGCTACACTTTCCGAATATGACCGGTTATAGAACCAATTATTCTGGACGTGCTTTTTACAATAAGCCATACACACTttggaacaaaaacaaaattgcttATTTCAACACCACTTTTGTTCTCAACATAAGTCCTCAAACTTCCCCTGGTGGAGAAGGCATAGCTTTTATCTTAGCTTCTGATGCAACTCTCCCTGAAAACAGTTCTGGACATTGGCTTGGTATTGTAAATGCTTCCACCAACGGAACTTCTCGAGCCACAATTCTTGCAGTTGAGTTTGATACACGAAAGAGTTCAACCGAAGACGGTCCTGACAACCATGTTGGAATCAACATAAATAGCATCTCCTCTTTGATACAAGCACCATTGATAAACACTAAGGTGAATCTTTCATCTGGTAAAGATGTAACTCTAAGAATTGAATATTTCAAAGATGTAATATCTGTTTTTGGTTCAATGACTGTAAATTCACAAGATTCTATGGAGACCCTTTTGGTATCCCCACCTCTTAATCTCTCTTCATATCTTAAACACGATGTTTATGTTGGATTCTCAGCTTCAACAAGTAATTACACAGAGCTGAATTGTGTGAGAGCATGGGAATTCAATGGTGTAGATattggtaataaaaaaaatctcttgtGGATTTGGATTTTAATTCCATTGGTCATAATCATAGGTGGATTAGTCTTTTTCATGGTATATTTTCTAAGGAGAAAAAACATGGACATTCAAGAAGATACGTATCCGAGGATAGAGGATCAAATTCAACACTCATCTATGGCTCCAAAGAAATATCAACTAAAGGAATTGATGAAAGCAACCGGTGGATTTAGTCATCAGAACAAACTTGGCGAAGGTGGATTTGGAACGGTTTATAAGGGTATTCTTGGAAACAACAAAGAGATAGCTGTGAAGAGAGTCTCGAAGAACTCGCGTCAAGGAAAGCAAGAATTTATAGCAGAAGTTACAACAATTGGAAGCCTTCACCACAAAAACTTAGTGAAACTCATTGGTTGGTGCTATGAAAACAAAGAGCTTCTCCTTGTTTACGAGTTTATGCCTCGAGGAAGTTTAGATAAATACTTGTTTAACCAATCAAGTGAGTTAGAAGTGCAATATTCAAAAGTACTTGATTGGAAAACAAGAAACAGCGTGATTCGTGATGTCGCCCAAGCGTTGGATTATCTTCACAATGGATGTGAGAAAAGAGTACTTCATAGAGACATTAAAGCAAGCAACATAATGTTGGATATTTTTTACAATGGTAAATTAGGTGATTTTGGATTAGCGCGTACAATTCAAAAGAGAAATGAAACTCATCATTCAACAAAGGAAATTGCGGGTACGCCAGGTTATATGGCACCCGAAACTTTTCTAACAGGAAGAGCGACGGTTGAAACAGATGTTTATGCATTTGGTGTACTTGTTTTGGAAGTTGTGTGCGGAAAAAGACCCGGGAATATGTATGCACAAGATGATTATAAGAATAGTATTGTTTATTGGGTTTGGGAGCTTTATGGAAAAGGCGATATTGTTAGCGCCGCGGATAAAAGGATAAGTTATGAAGAGAATGAGATTGAGAGGGTAAAATgggaagaagaacaagaagttgAGATtgaaagggtaaaattggaggAAGATATTGAAATTGTACTTATTCTTGGATTGGCTTGTTgtcatccaaatccaaatcaaaggCCATCAATGAAAACTGTTTTAATGGTTCTAAATGGAGAAGTTTCTCCTCCAAATGTTCCATTGGAAAGACCTGCTTTTGTTTGGCCTGCTATGCCTTCATCTTTCAAAGAAGGTGAAGATAATTCTCTTATCAATGGAACTCTCACTCCATTCACTCAACTTAGTGGCAGATAG	2328	0.363	MVNNRFIMLATQATTRSHNLIPFFLKLSSIVTTLWKMLHISDDLVGGIDLRSIVIIKLSRFRVITNSSVRNRTRWDSHSYAMRLIGRKFSDSVVQNDMVLWPFKVVGVNDDKPMIVVNYKGEEKHFCAEFTGPVLLLKAPGVAAMFRCFDVLLHFPNMTGYRTNYSGRAFYNKPYTLWNKNKIAYFNTTFVLNISPQTSPGGEGIAFILASDATLPENSSGHWLGIVNASTNGTSRATILAVEFDTRKSSTEDGPDNHVGININSISSLIQAPLINTKVNLSSGKDVTLRIEYFKDVISVFGSMTVNSQDSMETLLVSPPLNLSSYLKHDVYVGFSASTSNYTELNCVRAWEFNGVDIGNKKNLLWIWILIPLVIIIGGLVFFMVYFLRRKNMDIQEDTYPRIEDQIQHSSMAPKKYQLKELMKATGGFSHQNKLGEGGFGTVYKGILGNNKEIAVKRVSKNSRQGKQEFIAEVTTIGSLHHKNLVKLIGWCYENKELLLVYEFMPRGSLDKYLFNQSSELEVQYSKVLDWKTRNSVIRDVAQALDYLHNGCEKRVLHRDIKASNIMLDIFYNGKLGDFGLARTIQKRNETHHSTKEIAGTPGYMAPETFLTGRATVETDVYAFGVLVLEVVCGKRPGNMYAQDDYKNSIVYWVWELYGKGDIVSAADKRISYEENEIERVKWEEEQEVEIERVKLEEDIEIVLILGLACCHPNPNQRPSMKTVLMVLNGEVSPPNVPLERPAFVWPAMPSSFKEGEDNSLINGTLTPFTQLSGR	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01966	775	Gene3D	-	152	363	-	-
	Tsu01g01966	775	Gene3D	Phosphorylase Kinase; domain 1	403	504	-	-
	Tsu01g01966	775	Gene3D	Transferase(Phosphotransferase) domain 1	505	734	-	-
	Tsu01g01966	775	Pfam	Protein kinase domain	430	725	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01966	775	Pfam	Legume lectin domain	160	360	IPR001220	GO:0030246
	Tsu01g01966	775	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	165	765	-	-
	Tsu01g01966	775	Pfam	Hsp70 protein	82	129	IPR013126	GO:0005524\|GO:0140662
	Tsu01g01966	775	ProSiteProfiles	Protein kinase domain profile.	429	744	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01966	775	ProSitePatterns	Protein kinases ATP-binding region signature.	435	457	IPR017441	GO:0005524
	Tsu01g01966	775	SMART	serkin_6	429	728	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01966	775	CDD	lectin_legume_LecRK_Arcelin_ConA	166	354	IPR001220	GO:0030246
	Tsu01g01966	775	CDD	STKc_IRAK	435	730	-	-
	Tsu01g01966	775	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	556	568	IPR008271	GO:0004672\|GO:0006468
	Tsu01g01966	775	Gene3D	-	82	130	-	-
	Tsu01g01966	775	PANTHER	-	165	765	-	-
	Tsu01g01966	775	SUPERFAMILY	Protein kinase-like (PK-like)	410	728	IPR011009	-
	Tsu01g01966	775	SUPERFAMILY	Concanavalin A-like lectins/glucanases	158	354	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01966	Tsu-Chr1	19951110	19956121	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01966	166	744	Receptor kinase-like Gene Family	AT5G55830	37.299	3.86e-116	364

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Tsu01g01966		Pkinase	6.5e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01966	-		-	gmx:100785031	895.96